Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m18
         (325 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72503-1|CAA96596.2|  617|Caenorhabditis elegans Hypothetical pr...    26   7.2  
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine rece...    25   9.5  
AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical...    25   9.5  

>Z72503-1|CAA96596.2|  617|Caenorhabditis elegans Hypothetical
           protein C26C6.3 protein.
          Length = 617

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 168 LSYHFWLSCLYITI*KIIL**NYKQTSTCIQFNNK*IRP*ASYI 37
           + Y F  S  + TI +II    + + STCI F N    P   YI
Sbjct: 141 IKYRFHESIDFYTISQIIAAIRFWEDSTCITFENVSDSPDGDYI 184


>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical protein
            F29G6.3b protein.
          Length = 1785

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 92   HQHVYNLTISKSDLKLLISHTR 27
            H+H Y   + KSDLK  + H++
Sbjct: 1274 HEHGYVPPVKKSDLKTSVDHSK 1295


>U56963-4|AAB38117.2|  316|Caenorhabditis elegans Serpentine
           receptor, class v protein29 protein.
          Length = 316

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 52  RSDLLIVKLYTC*CLFIISLEYYLLDCNIKTTQ 150
           R  LL V++++  C F I   YYLL      TQ
Sbjct: 215 RELLLAVQVFSLLCAFFIMFLYYLLQNYFSQTQ 247


>AF016446-10|AAC24161.1| 1050|Caenorhabditis elegans Hypothetical
           protein C02E7.1 protein.
          Length = 1050

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 190 GCNVIFFFKLSFLVELSLYYNLKDNTL 110
           GC VI F +  F    S  ++LK NT+
Sbjct: 586 GCRVIGFAQKKFRARASTVFSLKSNTV 612


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,842,642
Number of Sequences: 27780
Number of extensions: 118743
Number of successful extensions: 245
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)