Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m17
         (371 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical p...    29   1.1  
Z95622-1|CAB09132.2|  480|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z68131-3|CAA92219.2|  480|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF497823-1|AAM18101.1|  479|Caenorhabditis elegans putative Na-H...    29   1.4  
AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical ...    28   2.4  
Z83116-5|CAB05568.2|  450|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical pr...    26   9.9  

>Z99281-50|CAD56259.3|  837|Caenorhabditis elegans Hypothetical
           protein Y57G11C.37 protein.
          Length = 837

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -1

Query: 269 QTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVF 114
           +++ +++A R    F E  I F   LLF     L   C LIN LI   ++ F
Sbjct: 613 ESVMSVYA-RPLDDFLEMFIQFGYVLLFSPAFPLAAVCALINNLIEIRVDAF 663


>Z95622-1|CAB09132.2|  480|Caenorhabditis elegans Hypothetical
           protein B0395.1 protein.
          Length = 480

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = -1

Query: 266 TLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEIN------VFGKS 105
           T   +FA +N   FY++ IT V TLLF   ++ +    +++      +N      VFG+S
Sbjct: 83  TSCFIFAFQN---FYDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYITVFGES 139

Query: 104 LL 99
           LL
Sbjct: 140 LL 141


>Z68131-3|CAA92219.2|  480|Caenorhabditis elegans Hypothetical
           protein B0395.1 protein.
          Length = 480

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = -1

Query: 266 TLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEIN------VFGKS 105
           T   +FA +N   FY++ IT V TLLF   ++ +    +++      +N      VFG+S
Sbjct: 83  TSCFIFAFQN---FYDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYITVFGES 139

Query: 104 LL 99
           LL
Sbjct: 140 LL 141


>AF497823-1|AAM18101.1|  479|Caenorhabditis elegans putative Na-H
           exchanger isoform 1 protein.
          Length = 479

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = -1

Query: 266 TLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLINFEIN------VFGKS 105
           T   +FA +N   FY++ IT V TLLF   ++ +    +++      +N      VFG+S
Sbjct: 82  TSCFIFAFQN---FYDFNITIVDTLLFSTVISAVDPVAVLSVFEEIHVNKLLYITVFGES 138

Query: 104 LL 99
           LL
Sbjct: 139 LL 140


>AC024817-2|AAU87810.1|  520|Caenorhabditis elegans Hypothetical
           protein Y54G2A.38 protein.
          Length = 520

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -1

Query: 296 LHYSNAHAKQTLATLFA-NRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINT 141
           LH+ NA+ +  + TL A NR  S F+ +    + ++LF  +L  ++   +  T
Sbjct: 98  LHFGNAYFQYFMVTLMAVNRTTSIFFYFVNEKIWSILFPLSLGAVILVEVFFT 150


>Z83116-5|CAB05568.2|  450|Caenorhabditis elegans Hypothetical
           protein M01B2.6 protein.
          Length = 450

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = -1

Query: 293 HYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINT 141
           +YS     +      +   H+ F    +TF  TL+F+N    M   N+  T
Sbjct: 98  YYSGTSDSEITINQVSKLTHAIFAFVQLTFDGTLVFRNKNRFMALRNIAKT 148


>Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical
           protein C44H4.4 protein.
          Length = 745

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 20/75 (26%), Positives = 37/75 (49%)
 Frame = -1

Query: 314 DDDATRLHYSNAHAKQTLATLFANRNHSSFYEYAITFVSTLLFKNNLNLMVACNLINTLI 135
           D+    +  +N H KQ  +    N   SS Y     F++ ++   N++L ++    +  I
Sbjct: 85  DEINVDVELTNEHKKQAKSNPLGNLGDSSSYG----FMNKII--ENMSLYIS----SVEI 134

Query: 134 NFEINVFGKSLLLSK 90
           NF+ +VFG S +L +
Sbjct: 135 NFDSDVFGGSFMLQR 149


>Z69384-3|CAA93418.1|  475|Caenorhabditis elegans Hypothetical
           protein T11G6.3 protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 287 SNAHAKQTLATLFANRNHSSFYEYAITFVSTLLF 186
           +NA     LATL A+   +  Y+Y    +ST LF
Sbjct: 178 TNASVGNILATLIASWTVNIGYQYPFLIISTALF 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,268,075
Number of Sequences: 27780
Number of extensions: 125248
Number of successful extensions: 329
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)