Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13m14
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0017 + 18937774-18937864,18938505-18940945 258 3e-69
04_01_0103 + 1082077-1082167,1083037-1085477 256 1e-68
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 231 4e-61
01_06_0662 + 30987187-30987277,30987825-30990214 222 3e-58
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 180 8e-46
03_05_0511 + 25056018-25059107 105 4e-23
02_04_0148 - 20198407-20201424 96 3e-20
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 52 4e-07
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 49 3e-06
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 38 0.011
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 37 0.020
01_04_0109 + 16112581-16112934 32 0.42
04_01_0330 - 4369326-4370852 30 2.2
09_06_0142 - 21107878-21109104 28 6.9
07_03_0698 - 20765305-20768526 28 9.1
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 258 bits (633), Expect = 3e-69
Identities = 116/178 (65%), Positives = 142/178 (79%)
Frame = -2
Query: 745 AGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRL 566
AGFQWA+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA LTA+PRL
Sbjct: 666 AGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 725
Query: 565 MEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 386
+EPVYL EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ L
Sbjct: 726 LEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQL 785
Query: 385 RSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 212
R+ T GQAFPQCVFDHW ++ DP E S+ +VQ+ RKRKGLKE + L+ + DKL
Sbjct: 786 RAATSGQAFPQCVFDHWDMMTSDPLEAGSQASTLVQDIRKRKGLKEQMTPLSDFEDKL 843
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 256 bits (627), Expect = 1e-68
Identities = 115/178 (64%), Positives = 141/178 (79%)
Frame = -2
Query: 745 AGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRL 566
AGFQWA+KEG +AEEN+RG+ F + DV LH DAIHRGGGQ+IPT RR +YA LTA+PRL
Sbjct: 666 AGFQWASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRL 725
Query: 565 MEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 386
+EPVYL EIQ PE A+GGIYGVLN++RGHVFEE Q GTP++ +KAYLPV ESFGF++ L
Sbjct: 726 LEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSQL 785
Query: 385 RSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 212
R+ T GQAFPQCVFDHW ++ DP E S+ +V + RKRKGLKE + L+ + DKL
Sbjct: 786 RAATSGQAFPQCVFDHWDMMTSDPLEVSSQANQLVLDIRKRKGLKEQMTPLSDFEDKL 843
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 231 bits (565), Expect = 4e-61
Identities = 104/178 (58%), Positives = 132/178 (74%)
Frame = -2
Query: 745 AGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRL 566
AGFQWA+KEG +AEEN+RGV F + DVTLH+D+IHRGGGQ+IPT RR +YA LTA PRL
Sbjct: 676 AGFQWASKEGALAEENMRGVCFELCDVTLHSDSIHRGGGQLIPTARRAMYAAQLTASPRL 735
Query: 565 MEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 386
MEP+Y +IQ P+ AVG +YGVLN R G + EES+ GTP+ ++ YLPV +SF FT L
Sbjct: 736 MEPMYQVDIQVPKTAVGNVYGVLNSRNGELVEESERTGTPLSNLRFYLPVAKSFDFTEKL 795
Query: 385 RSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 212
R+ T GQAFPQC+F HWQ + DP + S+ V+ + RKRKGLK+ + L+ Y DKL
Sbjct: 796 RAETSGQAFPQCIFHHWQTMRSDPFQEGSEAAKVITDIRKRKGLKDIITPLSDYEDKL 853
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 222 bits (542), Expect = 3e-58
Identities = 102/152 (67%), Positives = 123/152 (80%), Gaps = 2/152 (1%)
Frame = -2
Query: 745 AGFQWAAKEGVMAEENLRG--VRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQP 572
AGFQWA+KEG +AEEN+RG + F + DV LH+DAIHRGGGQIIPT RR +YA LTA+P
Sbjct: 662 AGFQWASKEGALAEENMRGRGICFEVCDVILHSDAIHRGGGQIIPTARRVIYAAQLTAKP 721
Query: 571 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTA 392
RL+EPVYL EIQ PE A+GGIY VLN++RGHVFEE Q GTP++ +KAYLPV ESFGFT+
Sbjct: 722 RLLEPVYLVEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFTS 781
Query: 391 DLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSK 296
LR+ T GQAFP VFDHW++L DP EP ++
Sbjct: 782 TLRAATSGQAFPLFVFDHWEMLSVDPLEPGTR 813
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 180 bits (439), Expect = 8e-46
Identities = 91/188 (48%), Positives = 120/188 (63%), Gaps = 12/188 (6%)
Frame = -2
Query: 742 GFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLM 563
GFQW A+EG + +E +R V+F I + + + +HRGGGQIIPT RR +Y+ L A PRLM
Sbjct: 793 GFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYSAFLMANPRLM 852
Query: 562 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 383
EPVY EIQ P V IY VL+RRRGHV + GTP+++VKA+LPV ESFGF DLR
Sbjct: 853 EPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLPVIESFGFETDLR 912
Query: 382 SNTGGQAFPQCVFDHWQVLPGD---------PCEP---QSKPYNVVQETRKRKGLKEGLP 239
+T GQAF VFDHW ++PGD P EP Q + +TR+RKG+ E +
Sbjct: 913 YHTQGQAFCLSVFDHWAIVPGDPLDKNIVLRPLEPAPIQHLAREFMVKTRRRKGMSEDV- 971
Query: 238 DLTQYLDK 215
+ ++ D+
Sbjct: 972 SINKFFDE 979
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 105 bits (252), Expect = 4e-23
Identities = 56/152 (36%), Positives = 81/152 (53%), Gaps = 8/152 (5%)
Frame = -2
Query: 745 AGFQWAAKEGVMAEENLRGVRFNI--YDVTLHTDAIHRG------GGQIIPTTRRCLYAC 590
+GFQ A G + +E + G+ F + Y H+DA + GQ+I +
Sbjct: 821 SGFQLATNAGPLCDEPMWGLVFVVEPYIFCDHSDAANHSEQYNIFSGQVITAVKEACREA 880
Query: 589 LLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNE 410
++ +PRL+E +Y CE+ P +G Y VL+R+R V +E GT +F V AYLPV E
Sbjct: 881 VVQNKPRLVEAMYFCELTTPTEQLGATYAVLSRKRARVLKEEMQEGTSLFTVHAYLPVAE 940
Query: 409 SFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 314
S GF+ +LRS T G A V HW+ +P DP
Sbjct: 941 SVGFSNELRSVTAGAASALLVLSHWEAIPEDP 972
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 95.9 bits (228), Expect = 3e-20
Identities = 55/152 (36%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Frame = -2
Query: 742 GFQWAAKEGVMAEENLRGVRFNIYDVTL---------HTDAIHRGGGQIIPTTRRCLYAC 590
GFQ A G + E G+ F + L +D GQII R A
Sbjct: 797 GFQLATNAGPLCGEPTWGLIFLVKPYILPDSADASNNQSDHYSTFSGQIITAVREACQAA 856
Query: 589 LLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNE 410
+L ++PRL+EP+Y CE+ P +G +Y VL R V +E GT +F V AYL V E
Sbjct: 857 ILESKPRLVEPMYFCELTTPTEQLGSMYAVLGNCRARVLKEEMQEGTSLFTVHAYLSVAE 916
Query: 409 SFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 314
S F+ LR+ T G A F HW+ +P DP
Sbjct: 917 SSEFSKKLRNATAGAASALLAFSHWETVPQDP 948
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 52.4 bits (120), Expect = 4e-07
Identities = 31/89 (34%), Positives = 46/89 (51%)
Frame = -2
Query: 589 LLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNE 410
L A PRL+EP+ E+ PE +G + G LN RRG V G + +V A++P+ E
Sbjct: 644 LRKAGPRLLEPIMKVEVITPEEHLGDVIGDLNSRRGQVNSFGDKPG-GLKVVDAFVPLAE 702
Query: 409 SFGFTADLRSNTGGQAFPQCVFDHWQVLP 323
F + + LR T G+A + V+P
Sbjct: 703 MFQYVSTLRGMTKGRASYTMQLAKFDVVP 731
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 49.2 bits (112), Expect = 3e-06
Identities = 32/126 (25%), Positives = 56/126 (44%)
Frame = -2
Query: 742 GFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLM 563
GF+ A G + + +R + D H A+ + C A+P ++
Sbjct: 617 GFKEACNSGSLIGHPVENIRIVLTDGASH--AVDSSELAFKLASIYAFRQCYAAARPVIL 674
Query: 562 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 383
EPV E++ P G + G +N+R+G + Q +V ++P+N FG++ LR
Sbjct: 675 EPVMKVELKVPTEFQGTVTGDMNKRKGIIVGNDQEGDDT--VVVCHVPLNNMFGYSTALR 732
Query: 382 SNTGGQ 365
S T G+
Sbjct: 733 SMTQGK 738
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 37.5 bits (83), Expect = 0.011
Identities = 20/89 (22%), Positives = 38/89 (42%)
Frame = -2
Query: 583 TAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESF 404
T +L EP + ++ PE +G + +L +RRG + + ++K +P
Sbjct: 497 TVDGKLQEPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLI 556
Query: 403 GFTADLRSNTGGQAFPQCVFDHWQVLPGD 317
G + + + G A +FD + GD
Sbjct: 557 GLRNAVLTASRGTAILNTIFDSYGPWAGD 585
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 36.7 bits (81), Expect = 0.020
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -3
Query: 411 SRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD 256
S S +P +P P D PS+ +T G S+ +N SP+ +Y K G D
Sbjct: 19 STSARVPGVIPKPIDLPSQRGTATQGDKSMPPASNAWGSPSVMYPKNGGGSD 70
>01_04_0109 + 16112581-16112934
Length = 117
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -3
Query: 414 MSRSVLLP--ICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGK 259
M+ VL P + +P+PA R R+ +T R++ +++ R PTT +R +G+
Sbjct: 1 MATEVLRPHNVLLPSPAQRRIRATAATHQRTANNHQSDARTKPTTAGSRRRQGR 54
>04_01_0330 - 4369326-4370852
Length = 508
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 615 VGMIWPPPLWMASVWSVTS 671
+G IWPPP+W S TS
Sbjct: 487 IGKIWPPPVWFKRCTSATS 505
>09_06_0142 - 21107878-21109104
Length = 408
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 290 VGLALRFARVSREDLPMVEYALREGLS-AGVGTQIGSKTER 409
V L L++ E LP++ A REG++ AGV +GS R
Sbjct: 171 VDLGLKYGANPDEVLPLLRAAQREGVAVAGVSFHVGSGASR 211
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -2
Query: 697 LRGVRFNIYDVTLHTDAIHRG----GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQ 536
L G + ++ D+ L D +HRG ++ P +L P+L+E +++C I+
Sbjct: 870 LSGTKASLIDLFLQVDKLHRGLLSLSIRMDPPGNWDAIDAILLRPPKLLESLHICSIR 927
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,472,282
Number of Sequences: 37544
Number of extensions: 483669
Number of successful extensions: 1241
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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