Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13m14
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 324 4e-89
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 324 4e-89
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 173 8e-44
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 173 8e-44
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 75 5e-14
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 47 2e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z82055-6|CAB04851.1| 365|Caenorhabditis elegans Hypothetical pr... 34 0.12
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 30 1.5
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 4.6
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 28 6.1
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 324 bits (796), Expect = 4e-89
Identities = 144/178 (80%), Positives = 160/178 (89%)
Frame = -2
Query: 745 AGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRL 566
AGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR YA +LTA+PRL
Sbjct: 675 AGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRL 734
Query: 565 MEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 386
+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADL
Sbjct: 735 LEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADL 794
Query: 385 RSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 212
RSNTGGQAFPQCVFDHWQVLPGDP E +KP +V +TRKRKGLKEG+P L YLDK+
Sbjct: 795 RSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVPALDNYLDKM 852
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 324 bits (796), Expect = 4e-89
Identities = 144/178 (80%), Positives = 160/178 (89%)
Frame = -2
Query: 745 AGFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRL 566
AGFQWA +EGV+++EN+RGVRFN++DVTLH DAIHRGGGQIIPT RR YA +LTA+PRL
Sbjct: 675 AGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRL 734
Query: 565 MEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADL 386
+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADL
Sbjct: 735 LEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADL 794
Query: 385 RSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLPDLTQYLDKL 212
RSNTGGQAFPQCVFDHWQVLPGDP E +KP +V +TRKRKGLKEG+P L YLDK+
Sbjct: 795 RSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVPALDNYLDKM 852
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 173 bits (422), Expect = 8e-44
Identities = 82/177 (46%), Positives = 112/177 (63%), Gaps = 12/177 (6%)
Frame = -2
Query: 742 GFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLM 563
GFQWA +EG + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+ L A PRLM
Sbjct: 773 GFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLM 832
Query: 562 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 383
EP Y E+ P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR
Sbjct: 833 EPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLR 892
Query: 382 SNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 248
+T GQAF F HWQ++PGDP + Q P+ + +TR+RKGL E
Sbjct: 893 IHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 949
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 173 bits (422), Expect = 8e-44
Identities = 82/177 (46%), Positives = 112/177 (63%), Gaps = 12/177 (6%)
Frame = -2
Query: 742 GFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLM 563
GFQWA +EG + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+ L A PRLM
Sbjct: 648 GFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLM 707
Query: 562 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 383
EP Y E+ P V +Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR
Sbjct: 708 EPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLR 767
Query: 382 SNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 248
+T GQAF F HWQ++PGDP + Q P+ + +TR+RKGL E
Sbjct: 768 IHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 824
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 74.9 bits (176), Expect = 5e-14
Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Frame = -2
Query: 745 AGFQWAAKEGVMAEENLRGVRFNI--YDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQP 572
AGF+ G + E + G+ + ++V AI GGQ++ + A
Sbjct: 696 AGFELFCNTGPLCNEIMHGIAVIVEEWNVDEEDGAI---GGQMMTAIKASCSAAAKKLAL 752
Query: 571 RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTA 392
RL+ +Y C + A+G ++ VL++R+ V E T +F V + +PV ESF F
Sbjct: 753 RLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFCD 812
Query: 391 DLRSNTGGQAFPQCVFDHWQVLPGDP 314
LR T G A Q F HWQV+ DP
Sbjct: 813 QLRKFTSGMASAQLQFSHWQVIDEDP 838
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/55 (43%), Positives = 28/55 (50%)
Frame = -2
Query: 478 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 314
V E T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 41.9 bits (94), Expect = 5e-04
Identities = 31/126 (24%), Positives = 53/126 (42%)
Frame = -2
Query: 742 GFQWAAKEGVMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLM 563
G EG + + + G+ I D + H A+ +I T + + A L+
Sbjct: 586 GLDAIVAEGPLIKSRIAGIHVRIQDGSTH--AVDSTEIAMINTMQNMMRESFEKANWLLL 643
Query: 562 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 383
EP+ E P G + L +R + G I +A P+++ FG+T++LR
Sbjct: 644 EPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELR 701
Query: 382 SNTGGQ 365
S T G+
Sbjct: 702 SLTEGK 707
>Z82055-6|CAB04851.1| 365|Caenorhabditis elegans Hypothetical
protein T26H2.6 protein.
Length = 365
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Frame = -1
Query: 296 ALQRCTGNEKEERIE-----GRSPRLNSIFGQIVNYIVKAN*NTYLYGKRFT-----HVY 147
A++ NEK ER+ G + LNS+FG +V I+ TY + T H+Y
Sbjct: 188 AVEYFVRNEKNERVLNYLSIGTALTLNSVFGAMVIVIIYCGVKTYKVTHKTTSHLSSHMY 247
Query: 146 FQQHMFRIMLKQT 108
Q+ +F +L QT
Sbjct: 248 IQKQLFTALLVQT 260
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 30.3 bits (65), Expect = 1.5
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = -2
Query: 634 GGQIIPT-----TRRCLYACLLTAQPRLMEPVYLCEIQCP-EVAVGGIYGVLNRRRGHVF 473
GG+I P ++C+ L + + L EPV +I+ + I L RRR H
Sbjct: 565 GGKINPALLSACAQKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFE 624
Query: 472 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 368
T + + A LP++E+ + +R+ T G
Sbjct: 625 HSDATESTEIRRICAILPLSETENLSKTVRTLTSG 659
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 323 REDLPMVEYALREGLSAGVGTQIGSKTERLID 418
+ED+ +EY + E ++ +GTQ+ KT +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 634 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 488
G Q + T RCL A +L + +M + + + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,131,215
Number of Sequences: 27780
Number of extensions: 404658
Number of successful extensions: 994
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -