Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13m13
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0419 - 20583812-20584123,20585911-20586006,20586195-205862... 31 1.00
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 31 1.3
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 29 5.3
04_03_0433 + 15878709-15878798,15879271-15879336,15880608-158807... 29 5.3
01_07_0229 + 42161770-42164562 28 7.0
10_01_0242 + 2534316-2535482 28 9.3
04_04_1599 + 34700250-34700437,34700799-34700869,34701029-347010... 28 9.3
>06_03_0419 -
20583812-20584123,20585911-20586006,20586195-20586298,
20586565-20586649
Length = 198
Score = 31.1 bits (67), Expect = 1.00
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +1
Query: 325 NLPIDEKAFCHCYHCHCTVSMETATRKNLHSFQYDRDCTGLAF*ASCHSWRRLVKS 492
N+ + KAFC CY T + + +L + G ++ +CH WR L S
Sbjct: 112 NVQLTSKAFC-CYEAEGTTLRDASCALHLKNEAACHPSCGQSYLKACHFWRYLATS 166
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 30.7 bits (66), Expect = 1.3
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -3
Query: 445 NLYNLDHIEMNVNFYELLFPLTLYNDND 362
++Y L ++++ +E++FPL +NDND
Sbjct: 306 SMYQLMQPQIDIILFEIIFPLMCFNDND 333
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 364 DNSDKTLSHQLVNYIFLASNYFQNCAKNFNYMRETFNVFGPFKQ 233
D + LS + + L S YF C K + +R F ++G Q
Sbjct: 861 DGGSENLSSSVADSQTLMSLYFALCTKKHSLLRHVFAIYGSLPQ 904
>04_03_0433 +
15878709-15878798,15879271-15879336,15880608-15880743,
15880813-15880900,15881674-15881826,15882214-15882376,
15882446-15882630,15882696-15882869,15883222-15883367,
15883498-15883621,15883702-15883882,15884986-15885145,
15885235-15885276,15885349-15885467,15885548-15885746,
15886263-15886394,15887546-15887649,15887750-15887929,
15888202-15888249
Length = 829
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -3
Query: 445 NLYNLDHIEMNVNFYELLFPLTLYNDND 362
++Y L ++++ +E++FPL +ND+D
Sbjct: 357 SMYQLMQPQIDIILFEIIFPLMCFNDSD 384
>01_07_0229 + 42161770-42164562
Length = 930
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = -3
Query: 637 RKLEDEDFLKLKALEFSKDIVNEKLQKIIVVTDGMKRLYEYCNCK-NSLETLPSAANYGS 461
R++ D ++ AL S V++ + I+ G+ ++ K S + NY S
Sbjct: 436 REVRIHDIIRDMALSISSGCVDQSMNWIVQAGVGIHKIDSRDIEKWRSARKISLMCNYIS 495
Query: 460 LLKR-LNLYNLDHIEMNVNFYELLFPLTLY 374
L ++ YNL ++ + NF+ + P +L+
Sbjct: 496 ELPHAISCYNLQYLSLQQNFWLNVIPPSLF 525
>10_01_0242 + 2534316-2535482
Length = 388
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 307 YWP-KICNLPIDEKAFCHCYHCHCTVSMETATRKNLHSFQYDRDCTGLA 450
YWP K ++ E A YH C + R+N+H + + GLA
Sbjct: 212 YWPLKSKHILAFELATSRLYHIECPPETHSVYRRNVHIMKAEDGGLGLA 260
>04_04_1599 +
34700250-34700437,34700799-34700869,34701029-34701093,
34701193-34701273,34701328-34701408,34701632-34701651,
34701795-34701867
Length = 192
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 433 LDHIEMNVNFYELLFPLTLYNDNDNSDKTLSHQLVNYIFLASNYFQN 293
LDH E+ V +YEL+F L D K H L+ + LA + N
Sbjct: 117 LDHSELQVLYYELIFADLL----DGFHKNWDHGLIAELTLAQSQLWN 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,851,873
Number of Sequences: 37544
Number of extensions: 287168
Number of successful extensions: 825
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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