Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m13
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.      30   2.1  
U13644-5|AAB52681.1|  451|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinas...    28   8.3  

>Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical
           protein F53A2.4 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -3

Query: 652 KESKRRKLEDEDFL-KLKALEFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLETL 485
           +E+K+RK E E  L + +A + +K+    +  K++ VTD     +E    KNS+E L
Sbjct: 68  EEAKKRKEEQERKLAERRAAQKAKEEEEFRNAKVVEVTDEEAAAFEKEQAKNSVENL 124


>AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.
          Length = 320

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -3

Query: 652 KESKRRKLEDEDFL-KLKALEFSKDIVNEKLQKIIVVTDGMKRLYEYCNCKNSLETL 485
           +E+K+RK E E  L + +A + +K+    +  K++ VTD     +E    KNS+E L
Sbjct: 68  EEAKKRKEEQERKLAERRAAQKAKEEEEFRNAKVVEVTDEEAAAFEKEQAKNSVENL 124


>U13644-5|AAB52681.1|  451|Caenorhabditis elegans Hypothetical
           protein F56D2.2 protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = +1

Query: 313 PKICNLPIDEKAFCHCYHC------HCTVSMETATRKNLHS-FQYDRDCTGLAF 453
           PK C++ I++   CH  HC       C +  ET  +++ +  FQ D  C+G  F
Sbjct: 340 PK-CSVSIEKNEGCHKMHCTKCDTYFCWLCSETLDKEDPYKHFQGDGSCSGRLF 392


>AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinase
           protein 9, isoform b protein.
          Length = 615

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -3

Query: 382 TLYNDNDNSDKTLSHQLVNYIFLASNYFQNCAKNFNYMRETFNVFGP 242
           T  N+NDN +  LS   + Y+   +N  Q    N     +T N   P
Sbjct: 63  TARNENDNQNHNLSPSDIRYLETITNLSQQALNNVKSTIDTINEVEP 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,758,330
Number of Sequences: 27780
Number of extensions: 297279
Number of successful extensions: 970
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)