Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m09
         (685 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.    129   7e-32
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    31   0.026
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    27   0.42 
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    27   0.73 
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    24   3.9  
DQ013245-1|AAY34441.1|  487|Anopheles gambiae adrenodoxin reduct...    24   5.1  
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    23   6.8  
AJ618923-1|CAF02002.1|  155|Anopheles gambiae odorant-binding pr...    23   9.0  
AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    23   9.0  

>L36067-1|AAA29362.1|  229|Anopheles gambiae polyubiquitin protein.
          Length = 229

 Score =  129 bits (312), Expect = 7e-32
 Identities = 58/76 (76%), Positives = 69/76 (90%)
 Frame = -1

Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
           MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1   MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query: 49  IQKESTLHMVLRLRGG 2
           IQKESTLH+VLRLRGG
Sbjct: 61  IQKESTLHLVLRLRGG 76



 Score =  129 bits (312), Expect = 7e-32
 Identities = 58/76 (76%), Positives = 69/76 (90%)
 Frame = -1

Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
           MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136

Query: 49  IQKESTLHMVLRLRGG 2
           IQKESTLH+VLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152



 Score =  129 bits (312), Expect = 7e-32
 Identities = 58/76 (76%), Positives = 69/76 (90%)
 Frame = -1

Query: 229 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 50
           MQIF+KTLTGKTIT E EP++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212

Query: 49  IQKESTLHMVLRLRGG 2
           IQKESTLH+VLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 31.5 bits (68), Expect = 0.026
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -2

Query: 222 YSSKH*RAKPLPP-KRNPQRRWPISSKKLPIKKVCP*INKDLSLRANNWKIPKLWPITIF 46
           Y + H   + +PP +RNP+RR P S  + P  +  P   +  S R  +W  P+  P +  
Sbjct: 240 YKNAHASIRKIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSRSTRPTSW--PRSRPTSKP 297

Query: 45  KR 40
           KR
Sbjct: 298 KR 299


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 27.5 bits (58), Expect = 0.42
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
 Frame = +1

Query: 265 VNVPLPPPMVELCNRRPIPTPRIISLQRQLISTPVIKNYQADVQEAIDAFKRLNITPGHL 444
           V +PL     EL   + +   R+I L+R+    P +K       EA +AF +  IT GH+
Sbjct: 665 VRLPLKAER-ELGESKEVALRRLIGLERRFEREPKVK-------EAYEAFMQEYITLGHM 716

Query: 445 GEVIDAMGQQGRLLPEIIEADDDFKVNQTRNL---SCKT 552
               +     G  +P       D    + R +   SCKT
Sbjct: 717 SVRENENSSDGYYMPHHAVFKQDSTTTKCRVVFDGSCKT 755


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 0.73
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 244 SNSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVD-QQRLIFAGKQ 83
           + +VK    ++T+  + I  ETE A+   DL+ +I   EG  V+   +  F+G Q
Sbjct: 339 AGNVKSLGQMETVEIRFIDEETEAADVERDLRNQITGLEGYKVEVTMKTSFSGMQ 393


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +3

Query: 381 SGRRARSDRCFQTT*YNTGPLGRGDRC 461
           +GR      C Q   Y TGPL   + C
Sbjct: 678 AGRCNEFKHCVQCQQYKTGPLAEANEC 704



 Score = 23.4 bits (48), Expect = 6.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 139 ADKEGVPVDQQRLIFAGKQLEDSKTM 62
           A  E  PVD   L+   K +ED KT+
Sbjct: 166 AQAEDYPVDLYYLMDLSKSMEDDKTI 191


>DQ013245-1|AAY34441.1|  487|Anopheles gambiae adrenodoxin reductase
           protein.
          Length = 487

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 35  RFLLNIVIGHSFGIFQLFARKDKSLLIYG 121
           RFL N+ +G  F + +L  R    LL YG
Sbjct: 99  RFLGNLCLGKDFTLEELRERYHAVLLTYG 127


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 638 KSHHSQSACV*QSRQRNNLSF 576
           K HH +S  V   +Q+N++SF
Sbjct: 845 KKHHKRSKRVKDGKQQNHVSF 865


>AJ618923-1|CAF02002.1|  155|Anopheles gambiae odorant-binding
           protein OBPjj5c protein.
          Length = 155

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 277 LPPPMVELCNRRPIPT 324
           LP  ++E C  RP+P+
Sbjct: 5   LPEQVIETCRARPLPS 20


>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 558 FDSFAAEIARLIHFKIVVSFYNFW 487
           F +F A +A+ + ++    +YN W
Sbjct: 589 FSTFHASLAKPVGWRPTFKYYNMW 612


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 781,495
Number of Sequences: 2352
Number of extensions: 16677
Number of successful extensions: 35
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)