Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m08
         (283 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   2.7  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    24   3.6  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    24   4.7  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    23   6.3  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    23   6.3  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    23   8.3  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    23   8.3  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    23   8.3  

>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 194 QIFSKSLLQVLLCSRLIIFLSYNAII 271
           +IF   ++ VL CSRL+  +S + ++
Sbjct: 406 EIFLNGVVSVLACSRLVFAVSRDGVL 431


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 276 LIIIALYDKKIINLLQSKTCKRLFEKI 196
           ++ I  YD   +  +  KTC++L EKI
Sbjct: 362 IVEICRYDIDSVRSVALKTCEKLMEKI 388


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 104 YNCYYTDNSDYRRCRLCRLDATRRRNK 184
           +N +Y D     R    R++ TRR+NK
Sbjct: 426 FNVFYPDLIGTGRAPTYRIERTRRKNK 452


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 113 YYTDNSDYRRCRLCRLDATRRRNKIN 190
           YY ++ +Y      +LD T R NK N
Sbjct: 571 YYRESKEYIASLYEKLDRTERNNKEN 596


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 282  KLLIIIALYDKKIINLLQSKTCKRLFEKIC 193
            K+ ++  L D K++      TCK L   IC
Sbjct: 1217 KIQLLSELKDMKLLGASDVDTCKSLKRSIC 1246


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 164 HLSDKDDSDGNRYYQYNNNCNFIYI 90
           H    D  +G R+Y+Y+    FIYI
Sbjct: 288 HAFPNDYRNGLRWYEYDPTKIFIYI 312


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -3

Query: 185 FCFCVVSHLSDKD 147
           F  C+++HLSD+D
Sbjct: 320 FLHCLINHLSDED 332


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 128 YYQYNNNCNFIYI 90
           YY Y N CN  YI
Sbjct: 866 YYYYGNECNESYI 878


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 894,849
Number of Sequences: 5004
Number of extensions: 13662
Number of successful extensions: 39
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)