Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m08
         (283 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410...    26   5.2  
02_05_0890 - 32546918-32547088,32547224-32547334,32547705-325478...    25   6.8  
04_04_0308 + 24286923-24286927,24288430-24288907,24288980-242890...    25   9.0  

>01_01_0558 +
           4098383-4098510,4100462-4100572,4100765-4100853,
           4100974-4101107,4101337-4101435,4102619-4102994,
           4103883-4104337,4104419-4107409
          Length = 1460

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 8   QHMFKSLYKFNYNKTLCTIIWVFILQHL 91
           Q +F+S++   Y++   ++IW F L  L
Sbjct: 104 QEVFRSVFLLQYDEQYASLIWTFHLHPL 131


>02_05_0890 -
           32546918-32547088,32547224-32547334,32547705-32547884,
           32547960-32548064,32548333-32548431,32548524-32548679,
           32548772-32548850,32549213-32549278,32549382-32549536,
           32549675-32550034,32550150-32550305,32550779-32550856,
           32551471-32551812
          Length = 685

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 185 FCF-CVVSHLSDKDDSD--GNRYYQYNNNCNFIYINVVK 78
           FC+ C+V+HLS K D    GN   +     NF+   V+K
Sbjct: 79  FCYMCIVTHLSHKSDCPCCGNYLTKAQLYPNFLLDKVLK 117


>04_04_0308 +
           24286923-24286927,24288430-24288907,24288980-24289099,
           24289182-24289235,24289467-24289579,24289799-24290011,
           24290123-24290201,24290323-24290376,24290448-24290522,
           24291029-24291193,24291843-24291941,24292186-24292241,
           24292331-24292433,24293289-24293417,24293657-24293835,
           24293953-24293977,24294060-24294175,24294252-24294342
          Length = 717

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 110 CYYTDNSDYRRCRLCRLDATRRRNKIN*QIFSKSLLQVLLCSRLIIFLSYN 262
           C +   +D+    LC  + T +       I ++S +Q L CS  I   SYN
Sbjct: 351 CKFQAETDFVSKYLCDNNITAKSYHSGLLIKNRSRVQELFCSNKIRVFSYN 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,870,282
Number of Sequences: 37544
Number of extensions: 66535
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)