Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m08
         (283 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC126112-1|AAI26113.1| 1237|Homo sapiens Ras protein-specific gu...    29   2.7  
AF181250-1|AAD55268.1| 1237|Homo sapiens Ras guanine nucleotide ...    29   2.7  
AF023130-1|AAB80953.1| 1237|Homo sapiens Ras-GRF2 protein.             29   2.7  
U60800-1|AAC50810.1|  862|Homo sapiens semaphorin protein.             28   4.8  
BC054500-1|AAH54500.1|  862|Homo sapiens sema domain, immunoglob...    28   4.8  
AL929575-4|CAI43250.2|  862|Homo sapiens sema domain, immunoglob...    28   4.8  
AL590233-3|CAI17379.2|  862|Homo sapiens sema domain, immunoglob...    28   4.8  
AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens ...    28   4.8  
AB210030-1|BAE06112.1|  870|Homo sapiens SEMA4D variant protein ...    28   4.8  

>BC126112-1|AAI26113.1| 1237|Homo sapiens Ras protein-specific
           guanine nucleotide-releasing factor 2 protein.
          Length = 1237

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 187 KLANFFKKPFTSFTLQQVNNFFVIQCNN 270
           KL++ +K+PFTS  ++ +  FF    NN
Sbjct: 681 KLSDIYKRPFTSIPVRSLELFFATSQNN 708


>AF181250-1|AAD55268.1| 1237|Homo sapiens Ras guanine nucleotide
           exchange factor 2 protein.
          Length = 1237

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 187 KLANFFKKPFTSFTLQQVNNFFVIQCNN 270
           KL++ +K+PFTS  ++ +  FF    NN
Sbjct: 681 KLSDIYKRPFTSIPVRSLELFFATSQNN 708


>AF023130-1|AAB80953.1| 1237|Homo sapiens Ras-GRF2 protein.
          Length = 1237

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 187 KLANFFKKPFTSFTLQQVNNFFVIQCNN 270
           KL++ +K+PFTS  ++ +  FF    NN
Sbjct: 681 KLSDIYKRPFTSIPVRSLELFFATSQNN 708


>U60800-1|AAC50810.1|  862|Homo sapiens semaphorin protein.
          Length = 862

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 11  HMFKSLY-KFNYNKTLCTIIWVFILQHLCI*NYNCY 115
           H  K++Y K + N+ L ++   F +  LC+  YNCY
Sbjct: 721 HSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCY 756


>BC054500-1|AAH54500.1|  862|Homo sapiens sema domain,
           immunoglobulin domain (Ig), transmembrane domain (TM)
           and short cy protein.
          Length = 862

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 11  HMFKSLY-KFNYNKTLCTIIWVFILQHLCI*NYNCY 115
           H  K++Y K + N+ L ++   F +  LC+  YNCY
Sbjct: 721 HSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCY 756


>AL929575-4|CAI43250.2|  862|Homo sapiens sema domain,
           immunoglobulin domain (Ig), transmembrane domain (TM)
           and short cy protein.
          Length = 862

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 11  HMFKSLY-KFNYNKTLCTIIWVFILQHLCI*NYNCY 115
           H  K++Y K + N+ L ++   F +  LC+  YNCY
Sbjct: 721 HSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCY 756


>AL590233-3|CAI17379.2|  862|Homo sapiens sema domain,
           immunoglobulin domain (Ig), transmembrane domain (TM)
           and short cy protein.
          Length = 862

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 11  HMFKSLY-KFNYNKTLCTIIWVFILQHLCI*NYNCY 115
           H  K++Y K + N+ L ++   F +  LC+  YNCY
Sbjct: 721 HSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCY 756


>AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42815 fis, clone BRCAN2014143. ).
          Length = 189

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 11  HMFKSLYKFNYNKTLCTIIWVFILQHLCI*NYNCYYTDNSDYRRCRLC 154
           H++  +Y   Y   +C  + V++  H C+    C YT      R R C
Sbjct: 66  HVYAYMYVRTYIHIMCMHVCVYVCVHACMCVCTCAYTHVFVCVRVRTC 113


>AB210030-1|BAE06112.1|  870|Homo sapiens SEMA4D variant protein
           protein.
          Length = 870

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 11  HMFKSLY-KFNYNKTLCTIIWVFILQHLCI*NYNCY 115
           H  K++Y K + N+ L ++   F +  LC+  YNCY
Sbjct: 729 HSEKTMYLKSSDNRLLMSLFLFFFVLFLCLFFYNCY 764


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,034,405
Number of Sequences: 237096
Number of extensions: 370316
Number of successful extensions: 848
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 76,859,062
effective HSP length: 70
effective length of database: 60,262,342
effective search space used: 1386033866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)