Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m08
         (283 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81132-12|CAE17968.1|  326|Caenorhabditis elegans Hypothetical p...    27   2.1  
AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine re...    26   3.6  
U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical p...    26   4.8  
AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical ...    26   4.8  

>Z81132-12|CAE17968.1|  326|Caenorhabditis elegans Hypothetical
           protein T26E4.16 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 35  FNYNKTLCTIIWVFILQHLCI*NYNCYYTDNSDYRRCRLCR 157
           FNY    C    +F  + L + N N  +      R+CR CR
Sbjct: 19  FNYGVLCCDACKMFFRRTLFVKNINSCHRLGECIRKCRSCR 59


>AF068713-3|AAC17793.1|  286|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 66 protein.
          Length = 286

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 194 QIFSKSLLQVLLCSRLIIFLSYNAIIIN 277
           Q F   +L VLLC RL I+ +Y AI  N
Sbjct: 179 QYFIIGVLSVLLCFRLFIWNNYVAIHAN 206


>U20861-11|AAA62291.2| 1714|Caenorhabditis elegans Hypothetical
           protein C28H8.3 protein.
          Length = 1714

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 119 TDNSDYRRCRLCRLDATRRRNKIN*QIFSKSLLQVLLCSRLIIFLSYNAIII 274
           TDN     C    +D T++   I   + ++S+  VLL S  + F+S  A  I
Sbjct: 225 TDNVTQNVCASQEIDLTKQFETIAFDVLTRSMSVVLLHSIKVNFVSVEAYYI 276


>AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical
           protein H42K12.3 protein.
          Length = 522

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 113 YYTDNSDYRRCRLCRLDATRRRNKIN*QIFSKSLLQVLLCSRLI 244
           Y++D SD+  C        RRR  +N +    +L+QV  C  +I
Sbjct: 383 YFSDWSDWTPCTKSNERQVRRRRCLNLRKCLGALMQVQNCPEII 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,962,756
Number of Sequences: 27780
Number of extensions: 78513
Number of successful extensions: 250
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 259761072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)