Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13m08
(283 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 35 2e-04
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 29 0.011
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 29 0.014
AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex det... 28 0.025
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 28 0.025
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 28 0.025
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 27 0.044
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 27 0.044
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 27 0.044
L10433-1|AAA27732.1| 149|Apis mellifera transposase protein. 25 0.23
DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex det... 23 0.54
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 23 0.54
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 23 0.54
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 23 0.54
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 23 0.54
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 23 0.54
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 23 0.54
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 0.54
DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex det... 22 1.7
DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex det... 22 1.7
DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex det... 22 1.7
DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex det... 22 1.7
AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex det... 22 1.7
AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex det... 22 1.7
AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex det... 22 1.7
AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex det... 22 1.7
S76959-1|AAB33934.1| 85|Apis mellifera olfactory receptor prot... 21 2.2
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 21 3.8
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 20 5.0
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 20 6.7
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 20 6.7
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 20 6.7
AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein. 20 6.7
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 34.7 bits (76), Expect = 2e-04
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 173 VVSHLSDKDDSDGNRY-YQYNNNCNFIYINV 84
++S LS+K + N Y Y YNNNC +Y N+
Sbjct: 81 IISSLSNKTIHNNNNYKYNYNNNCKKLYYNI 111
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 29.1 bits (62), Expect = 0.011
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 173 VVSHLSDKDDSDGNRYYQYNNNCNFIYINVVK*KPILLYIMFY 45
++S LS+K + N Y YNN + IN ++ P+ + + Y
Sbjct: 303 IISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPVPVPVPIY 345
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 28.7 bits (61), Expect = 0.014
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
Frame = -3
Query: 173 VVSHLSDKDDSDGNRYY------QYNNNCNFIY--INVVK*KPILLYIMFYC 42
++S LS++ + N Y YNNNC +Y IN ++ P+ + + YC
Sbjct: 81 IISSLSNRTIHNNNNYKYNYNNNNYNNNCKKLYYNINYIEQIPVPVPVPIYC 132
>AY569716-1|AAS86669.1| 406|Apis mellifera complementary sex
determiner protein.
Length = 406
Score = 27.9 bits (59), Expect = 0.025
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 143 SDGNRYYQYNNNCNFIYINVVK*KPILLYIMFYC 42
S+ Y YNNN +Y N++ + I + + YC
Sbjct: 319 SNNYNYNNYNNNYKPLYYNIINIEQIPVPVPIYC 352
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 27.9 bits (59), Expect = 0.025
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 173 VVSHLSDKDDSDGNRYYQYNNNCNFIYINVVK*KPILLYIMFYC 42
++S LS+K + N Y YN +Y N++ + I + + YC
Sbjct: 314 IISSLSNKTIHNNNNYKNYNKK---LYYNIINIEQIPVPVPVYC 354
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 27.9 bits (59), Expect = 0.025
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 143 SDGNRYYQYNNNCNFIYINVVK*K--PILLYIMFYC 42
++ N YNNNC +Y N++ + P+ + + YC
Sbjct: 339 NNNNYNNNYNNNCKKLYYNIINIEQIPVPVPVPIYC 374
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 27.1 bits (57), Expect = 0.044
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Frame = -3
Query: 173 VVSHLSDKDDSDGNRYY------QYNNNCNFIYINV 84
++S LS+K + N Y YNNNC +Y N+
Sbjct: 81 IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNI 116
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 27.1 bits (57), Expect = 0.044
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Frame = -3
Query: 173 VVSHLSDKDDSDGNRYY------QYNNNCNFIYINV 84
++S LS+K + N Y YNNNC +Y N+
Sbjct: 81 IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNI 116
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 27.1 bits (57), Expect = 0.044
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Frame = -3
Query: 173 VVSHLSDKDDSDGNRYY------QYNNNCNFIYINV 84
++S LS+K + N Y YNNNC +Y N+
Sbjct: 81 IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLYYNI 116
>L10433-1|AAA27732.1| 149|Apis mellifera transposase protein.
Length = 149
Score = 24.6 bits (51), Expect = 0.23
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 163 CDTTQKQNKLANFFKKPFTSFTLQQVNN 246
CD +K+N+ F K+P T VNN
Sbjct: 12 CDLLKKRNENDPFLKRPITGDEKWVVNN 39
>DQ325115-1|ABD14129.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 0.54
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Frame = -3
Query: 134 NRYYQYNNNCN-----FIYINVVK*KPILLYIMFYC 42
N Y YNNN N Y N++ + I + + YC
Sbjct: 96 NNYNNYNNNYNTNYKKLQYYNIINIEQIPVPVPIYC 131
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 0.54
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 173 VVSHLSDKDDSDGNRYYQYNNN 108
++S LS+ + N Y YNNN
Sbjct: 80 IISSLSNNTIHNNNYKYNYNNN 101
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.4 bits (48), Expect = 0.54
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 173 VVSHLSDKDDSDGNRYYQYNNN 108
++S LS+ + N Y YNNN
Sbjct: 80 IISSLSNNTIHNNNYKYNYNNN 101
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 0.54
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 173 VVSHLSDKDDSDGNRYYQYNNN 108
++S LS+ + N Y YNNN
Sbjct: 81 IISSLSNNTIHNNNYKYNYNNN 102
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 0.54
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 173 VVSHLSDKDDSDGNRYYQYNNN 108
++S LS+ + N Y YNNN
Sbjct: 81 IISSLSNNTIHNNNYKYNYNNN 102
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 0.54
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 173 VVSHLSDKDDSDGNRYYQYNNN 108
++S LS+ + N Y YNNN
Sbjct: 81 IISSLSNNTIHNNNYKYNYNNN 102
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 23.4 bits (48), Expect = 0.54
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 173 VVSHLSDKDDSDGNRYYQYNNN 108
++S LS+ + N Y YNNN
Sbjct: 81 IISSLSNNTIHNNNYKYNYNNN 102
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.4 bits (48), Expect = 0.54
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Frame = -3
Query: 134 NRYYQYNNNCNFIY------INVVK*KPILLYIMFYC 42
N Y YNNN N Y IN ++ P+ + + YC
Sbjct: 335 NNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPVPIYC 371
>DQ325094-1|ABD14108.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 1.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 143 SDGNRYYQYNNNCNFIYINV 84
S+ Y YNNN +Y N+
Sbjct: 86 SNNYNYNNYNNNYKPLYYNI 105
>DQ325093-1|ABD14107.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 1.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 143 SDGNRYYQYNNNCNFIYINV 84
S+ Y YNNN +Y N+
Sbjct: 86 SNNYNYNNYNNNYKPLYYNI 105
>DQ325092-1|ABD14106.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 1.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 143 SDGNRYYQYNNNCNFIYINV 84
S+ Y YNNN +Y N+
Sbjct: 86 SNNYNYNNYNNNYKPLYYNI 105
>DQ325091-1|ABD14105.1| 175|Apis mellifera complementary sex
determiner protein.
Length = 175
Score = 21.8 bits (44), Expect = 1.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 143 SDGNRYYQYNNNCNFIYINV 84
S+ Y YNNN +Y N+
Sbjct: 86 SNNYNYNNYNNNYKPLYYNI 105
>AY569710-1|AAS86663.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 1.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 143 SDGNRYYQYNNNCNFIYINV 84
S+ Y YNNN +Y N+
Sbjct: 319 SNNYNYNNYNNNYKPLYYNI 338
>AY569708-1|AAS86661.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 1.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 143 SDGNRYYQYNNNCNFIYINV 84
S+ Y YNNN +Y N+
Sbjct: 319 SNNYNYNNYNNNYKPLYYNI 338
>AY569707-1|AAS86660.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 1.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 143 SDGNRYYQYNNNCNFIYINV 84
S+ Y YNNN +Y N+
Sbjct: 319 SNNYNYNNYNNNYKPLYYNI 338
>AY569706-1|AAS86659.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.8 bits (44), Expect = 1.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 143 SDGNRYYQYNNNCNFIYINV 84
S+ Y YNNN +Y N+
Sbjct: 308 SNNYNYNNYNNNYKPLYYNI 327
>S76959-1|AAB33934.1| 85|Apis mellifera olfactory receptor
protein.
Length = 85
Score = 21.4 bits (43), Expect = 2.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 221 VLLCSRLIIFLSYNAIIIN 277
V++ S LII +SY I+ N
Sbjct: 18 VVIVSSLIILISYALILFN 36
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 20.6 bits (41), Expect = 3.8
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -3
Query: 173 VVSHLSDKDD-SDGNRYYQYNNN 108
++S LS+ S+ N Y YNNN
Sbjct: 314 IISSLSNNYKYSNYNNYNNYNNN 336
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 20.2 bits (40), Expect = 5.0
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = +2
Query: 110 CYYTDNSDYRRCRLC 154
CY+T + + R RLC
Sbjct: 164 CYFTAHVTHPRHRLC 178
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 19.8 bits (39), Expect = 6.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +1
Query: 241 NNFFVIQCNNY 273
NN+ + CNNY
Sbjct: 94 NNYKKLYCNNY 104
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 19.8 bits (39), Expect = 6.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +1
Query: 241 NNFFVIQCNNY 273
NN+ + CNNY
Sbjct: 94 NNYKKLYCNNY 104
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 19.8 bits (39), Expect = 6.7
Identities = 6/11 (54%), Positives = 8/11 (72%)
Frame = +1
Query: 241 NNFFVIQCNNY 273
NN+ + CNNY
Sbjct: 94 NNYKKLYCNNY 104
>AB231585-1|BAE17127.1| 898|Apis mellifera Mahya protein.
Length = 898
Score = 19.8 bits (39), Expect = 6.7
Identities = 6/15 (40%), Positives = 10/15 (66%)
Frame = -3
Query: 176 CVVSHLSDKDDSDGN 132
C + H+ DD+DG+
Sbjct: 274 CNLGHMISYDDTDGD 288
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,850
Number of Sequences: 438
Number of extensions: 1214
Number of successful extensions: 34
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used: 5494764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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