Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m07
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    27   2.7  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    27   3.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   4.8  

>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 721 ANHCSLLADRNNGIPWEAKTLLRFIY 644
           AN CS+ A  +N + W+  T  RF Y
Sbjct: 57  ANFCSISATDDNALRWDKITYHRFAY 82


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +2

Query: 113 LIHSMLSMGFYNHLFPVGLTAH*HVEVKKNTLELKHTVPLLNL*LIF 253
           + HS LS   Y  LFP   + H H+    N  +L    P + L LIF
Sbjct: 161 IAHSSLSR-LYTILFPYAGSEHTHIGHSHNPSQLLFEHPFMALGLIF 206


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 504  LQFIFNGGNISLTEISRQNKINAYI 578
            +  I NG NI +TE+++QN +N  +
Sbjct: 3040 VDLIPNGRNIPVTELNKQNYVNRMV 3064


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,958
Number of Sequences: 5004
Number of extensions: 53617
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)