Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m06
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    30   0.29 
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    30   0.38 
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   4.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.7  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   4.7  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    26   6.3  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    26   6.3  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    25   8.3  

>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = -3

Query: 228 VRVTTNPNGAVYLLYVNKSR*RRGARMQLITYAPRVPFKDGVIDLRLIFIGRLFSYPLTK 49
           V+ T +    + LL++N S  +  A +  +  AP V  +     +RLIF GR +   L  
Sbjct: 138 VKDTNDLKDRIRLLHLNSSS-KLNAFLHDLINAPNVSAEMKENCVRLIFFGRKYDPFLRS 196

Query: 48  RVFALTI 28
           R+F LTI
Sbjct: 197 RMFTLTI 203


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -2

Query: 688 GYFGLNADPYDCTAYYICPHKVQMFCESNHEFDLD---SASCKP 566
           G+ G+ A+PY  + YY+ P  ++   ES + F       ASC+P
Sbjct: 487 GFCGVPAEPYPSSLYYLQPGVLRSSIESAYSFAHSLGIEASCQP 530


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 11  NIRRHTMVNAKTRLVSGYENSRPININLRSITPS 112
           N R+H    +KT + S +E  +PI+ ++    PS
Sbjct: 754 NFRKHNAKRSKTDIRSWFEKKQPIDSDVEISEPS 787


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 47   RLVSGYENSRPININLRSITPSLNGTRG 130
            RL+  YE S+PI I+L ++  S+N T+G
Sbjct: 984  RLLENYE-SKPICIDLLALDLSVNSTKG 1010


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = -3

Query: 369 DIIIKSLA*NLSGPLSVCASMPVTDLVLLASK---VLRTDKMCHTCSSACVRVTTNPNGA 199
           D II +L  N  G +++C   P+T++ L  +K   V++  K     + A   V      A
Sbjct: 104 DFIIDTLRNNEPGTITICTIGPLTNIALALNKAPEVIQRAKQIVMMAGAFSEVGNITPAA 163

Query: 198 VYLLYVN 178
            + +YV+
Sbjct: 164 EFNIYVD 170


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 56  SGYENSRPININLRSITPSLNG 121
           +G +  + I+INL  +TPSLNG
Sbjct: 333 TGAKYDQIIDINLSELTPSLNG 354


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 261 DKMCHTCSSACVRVTTNPNGAVY 193
           DK  +T SSA    TTNP+G+ +
Sbjct: 119 DKSKNTASSATGAATTNPSGSTF 141


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 637 CPHKVQMFCESNHEFDLDSASCKPIVYD 554
           CP+  + F E  HEF+ D  +   + YD
Sbjct: 77  CPYLKESFYEFMHEFEFDPENSISLNYD 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,024
Number of Sequences: 5004
Number of extensions: 61874
Number of successful extensions: 131
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)