Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m02
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   0.44 
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    24   2.3  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    23   5.4  
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-...    23   7.2  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    22   9.5  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +3

Query: 69   KSLNYIVQQLSRSSNINARLL 131
            +S+N  + Q  RSSNINARLL
Sbjct: 1565 RSMNTQLLQYLRSSNINARLL 1585


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = -1

Query: 149 WPMSTAKQSCVYI*RARQLLNNIIETFVSKWMATFKLSILAW 24
           W   +   SC ++  A++ L +++ET    +    K+   +W
Sbjct: 175 WKEKSLTSSCKFLFEAKERLTSVVETEHEYYTELVKVKEASW 216


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 79  LRLLSQNGWRHSNCPY 32
           LR LS+NG +   CPY
Sbjct: 368 LRQLSRNGSQRFKCPY 383


>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
           oxidoreductase/ARE-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 329

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 19  WAQASMDNLNVAIHFETKVS 78
           W +   +NLN+AIH   K+S
Sbjct: 281 WKEILDNNLNIAIHHIFKLS 300


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 47  MSPSILRQKSQLYCSAVVSLFKYKRTTASLL 139
           +SP++    + LY  AVVS+FK       +L
Sbjct: 113 VSPAVPITFAYLYALAVVSMFKCSTADPGIL 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,814
Number of Sequences: 5004
Number of extensions: 8153
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)