Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m02
         (161 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539...    25   6.3  
09_04_0493 - 18046553-18046990,18047061-18047180,18047290-180474...    25   8.3  

>03_06_0140 +
           31951569-31951710,31951943-31952037,31952141-31953982,
           31954065-31954179,31954260-31954897
          Length = 943

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -3

Query: 135 SEAVVRLYLKSETTAE-QYN*DFCLKMDGDIQIVHTS 28
           +EA+V + + + T  + QY  D  +++DGDI+ ++ S
Sbjct: 822 TEAIVEVSMANTTNMKLQYLDDLIMELDGDIESLNIS 858


>09_04_0493 -
           18046553-18046990,18047061-18047180,18047290-18047478,
           18047596-18047739,18048673-18048900,18049659-18049838,
           18050304-18050399,18051096-18051262,18051356-18051773,
           18052335-18052517,18053846-18053953,18054053-18054246,
           18054503-18054662
          Length = 874

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 68  QKSQLYCSAVVSLFKYKRTTASLLT 142
           QKS LYC A+ +L K K T  ++ T
Sbjct: 609 QKSDLYCIALHALVKAKDTHKAIKT 633


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,957,562
Number of Sequences: 37544
Number of extensions: 48430
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 14,793,348
effective HSP length: 34
effective length of database: 13,516,852
effective search space used: 256820188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)