Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m02
         (161 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF457547-1|AAL68777.1|  163|Anopheles gambiae selenoprotein prot...    23   1.3  
AJ276486-1|CAB90818.1|  364|Anopheles gambiae serine protease pr...    21   3.9  
AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate phospho...    21   5.1  
AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containi...    20   8.9  

>AF457547-1|AAL68777.1|  163|Anopheles gambiae selenoprotein
           protein.
          Length = 163

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 71  KSQLYCSAVVSLFKY 115
           KSQL+CSA  SL  Y
Sbjct: 33  KSQLFCSACSSLSDY 47


>AJ276486-1|CAB90818.1|  364|Anopheles gambiae serine protease
           protein.
          Length = 364

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 117 LYLKSETTAEQYN*DFCLKMDGDIQ 43
           L L S+ T   Y    CL  D D+Q
Sbjct: 216 LRLASDVTFNDYVRPICLPFDPDVQ 240


>AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate
           phosphoribosyltransferase-like protein protein.
          Length = 519

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 48  CRHPF*DKSLNYIV 89
           CRHPF +    Y++
Sbjct: 429 CRHPFQESKRAYVI 442


>AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containing
           protein I protein.
          Length = 1340

 Score = 20.2 bits (40), Expect = 8.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +1

Query: 73  VSIILFSSCLALQI*THDCFAVDIGQM 153
           V +  +   L L    HD F  DIGQ+
Sbjct: 545 VGLAAYDKALLLFNKNHDLFWEDIGQV 571


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,405
Number of Sequences: 2352
Number of extensions: 2441
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 33
effective length of database: 486,363
effective search space used:  9727260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)