Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13m02
         (161 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   0.79 
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              20   3.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   5.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   5.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    19   7.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       19   7.4  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 0.79
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 68  VSKWMATFKLSILAWA 21
           +S WM  + + ILAWA
Sbjct: 69  MSCWMNVYYIVILAWA 84


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +1

Query: 70  KVSIILFSSCLALQI*THDCFAVDIGQMTP 159
           K  +I+F+ C+ +   TH+     I  + P
Sbjct: 2   KTFVIIFAICVCVGAMTHEELKTGIQTLQP 31


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 68  VSKWMATFKLSILAWA 21
           +S W   + + ILAWA
Sbjct: 107 LSCWTNIYYIIILAWA 122


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 68  VSKWMATFKLSILAWA 21
           +S W   + + ILAWA
Sbjct: 160 LSCWTNIYYIIILAWA 175


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 43  NCPY*LGPIKCL 8
           +CP  LG  KC+
Sbjct: 175 SCPLILGSCKCI 186


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/18 (27%), Positives = 10/18 (55%)
 Frame = +1

Query: 49  VAIHFETKVSIILFSSCL 102
           +  H ET  ++  +S C+
Sbjct: 173 IVFHLETHPNVTWYSQCV 190



 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/17 (41%), Positives = 7/17 (41%)
 Frame = +3

Query: 3   CNKHLMGPS*YGQFECR 53
           C    M P  YG F  R
Sbjct: 306 CTNSCMNPIVYGAFNIR 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,473
Number of Sequences: 438
Number of extensions: 540
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used:  2637780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)