Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l23
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    30   1.0  
01_05_0011 + 17133501-17133738,17135335-17135607,17145224-171453...    28   4.2  
11_01_0678 - 5534879-5534883,5535430-5535529,5535638-5535799,553...    27   9.7  

>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -2

Query: 161  RQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFLANF-LVTKTGRSIPI 9
            RQ+D  IHA+L N +    ++ F+   +    E   LAN   +T+TGRS+ I
Sbjct: 2305 RQLDPYIHAILKNTN-RMVMYCFLPTFLKNMGEDDLLANLAFLTETGRSLGI 2355


>01_05_0011 +
           17133501-17133738,17135335-17135607,17145224-17145348,
           17145463-17145612,17145653-17145696,17145822-17146174,
           17146280-17146602,17147010-17147105
          Length = 533

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +1

Query: 373 KKFFIKLDILTSTYYQSIELVFLFKIASSACSISNFFRTLLAL*LGMSSTLDSVFL 540
           KK  + L +L    + ++ L+F F +   A SIS FF   ++L L     L  V L
Sbjct: 99  KKSNLFLQVLIDFIHFALALIFNFGLEGEASSISFFFNLYMSLVLIFPKRLAGVIL 154


>11_01_0678 -
           5534879-5534883,5535430-5535529,5535638-5535799,
           5536000-5536966,5537444-5537561,5538682-5538871,
           5538952-5539107,5539296-5540315
          Length = 905

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 505 VIKLRASEKNWKSSKRLMRF 446
           V++L A ++ WKSSKR  +F
Sbjct: 49  VLRLDADKERWKSSKRFKKF 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,612,564
Number of Sequences: 37544
Number of extensions: 189535
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)