Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l22
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ... 48 1e-06
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 33 0.042
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 28 1.2
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 2.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 2.8
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 3.7
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 26 4.8
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.8
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.4
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 6.4
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 25 8.5
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 8.5
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 25 8.5
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 8.5
>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 284
Score = 48.4 bits (110), Expect = 1e-06
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Frame = -1
Query: 676 SRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDY 497
+R+L T + ++ +E Q N D RKTQ + +KF++ + + + + Y
Sbjct: 72 TRRLQTSVQLAIRSLESQNMQLPPDN----DTATRKTQTEAVKKKFMDQIRHFLQIEKTY 127
Query: 496 RDRCKSRIQRQLEITG-RATTDDELEEMLEQGNSAVFTQGYLDT----QLRTVMRK 344
R + + R++RQLEI RAT DD + E+ VF Q L + + RT +R+
Sbjct: 128 RAQYEQRMRRQLEIANPRATEDDFQTAINEENGGQVFAQALLRSNRSGEARTALRE 183
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 33.1 bits (72), Expect = 0.042
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = -1
Query: 640 KHIEQNIEQEEHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRDRCKSRIQRQL 461
KH +N+ EE+ K S + R RK + ++ E E R Q + D +++Q++L
Sbjct: 47 KHFYKNVRPEEYIKKGSGE-RKRKFSKKSHLQELYERSEEKRRIQQEKED---AKVQKRL 102
Query: 460 EITGRATTDDELEEMLEQ 407
EI + ++ ML +
Sbjct: 103 EIEKKQKDREQTRNMLSK 120
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -1
Query: 679 MSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQ 563
+SRK T SE K+K + QEE S++ AD R Q
Sbjct: 256 VSRKWSTNSESKIKRVALETSQEE-SDREIADRRSASEQ 293
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 27.5 bits (58), Expect = 2.1
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -1
Query: 613 EEHSNK-SSADLRIRKTQHSTLS-RKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRAT 440
E++S+K SS +L +RK S RK + + +R Q K R Q+QLEI R
Sbjct: 205 EDYSSKFSSEELALRKLADDPESWRKLASELRKKSRQQY-----LKPRAQQQLEILRREI 259
Query: 439 TDDE 428
D+E
Sbjct: 260 RDEE 263
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = -3
Query: 701 NLEDLMADVKKTANKVRGKIKTYRTEHRTRGALEQIVGRSQDKKDPTFNSLP*VRRGDDR 522
+LED +A ++K KIK+ T + L + R+ + +D S+ +RR DDR
Sbjct: 1650 SLEDSVASLQKEC-----KIKS-NTVESLQDVLTSVQARNAELEDEVSRSVDKIRRRDDR 1703
Query: 521 VQPHADRLQR 492
+ + +L++
Sbjct: 1704 CEHLSGKLKK 1713
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 664 PTKSEGKLKHIEQNIEQEEHSNK 596
P++ EG L+ I+ + ++EEH N+
Sbjct: 164 PSQPEGNLEDIQTSSQEEEHDNE 186
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 682 LMSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTLSR 545
L K+P + + KLK N E E ++SS L + STL R
Sbjct: 353 LSPSKIPIRKKRKLKDTVSNCEFTEEDSESSFLLETIQPTKSTLRR 398
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -1
Query: 646 KLKHIEQNIEQEEHSNKS-SADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRD 491
+L+H++ N E+E+ N++ ++ + Q++T S + V + + N RD
Sbjct: 435 QLEHLKHNYEEEKSMNENLLVRIQTLEKQNTTKSDQIVSMQFQINDLNEQLRD 487
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 465 NSRSRAAPPPTMNSRKCSNKATR 397
NSR R +P P + + CS+++ R
Sbjct: 204 NSRYRGSPKPNIEKQSCSSESDR 226
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 477 GYRDNSRSRAAPPPTMNSRKCSNKA 403
GY D+S S AAP P SRK S+ +
Sbjct: 262 GYSDHSVSVAAPIPKKESRKESSNS 286
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -1
Query: 727 SQDEKNEA*TWRILWLMSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTLS 548
S DE E + WL S + SE + + ++ E+ + +R RKT + S
Sbjct: 215 SDDEDEEEISDLEDWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKS 274
Query: 547 RK 542
RK
Sbjct: 275 RK 276
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 631 EQNIEQEEHSNKSSADLRIRKTQHSTLSRKFVEVMTE 521
E++ E EE+ + + + K H+T+ R F E MTE
Sbjct: 24 EKHFEAEEYRDSFLSQENMNKINHTTIERLFRE-MTE 59
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -1
Query: 574 RKTQHSTLSRKFVEVMTEYNRTQTDYRDRCKSRIQR---QLEITGRATTDDE 428
+KT+H KFV+++ E+ + +Y +R K+++ R + T A T DE
Sbjct: 196 KKTRHDYPRDKFVDIVWEW---KEEYHNRIKNQMSRLGGSFDWTREAFTMDE 244
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 654 DFVGSFLDISHKILQVHASF 713
D++ SFL HK+LQ H+SF
Sbjct: 35 DYI-SFLTKLHKVLQTHSSF 53
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,168
Number of Sequences: 5004
Number of extensions: 49052
Number of successful extensions: 157
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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