Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l22
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0128 + 1932721-1935181,1936099-1936256                           32   0.41 
09_02_0154 + 5055946-5058721,5058754-5058770                           28   6.7  
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42...    28   6.7  
03_01_0146 - 1161005-1161133,1161239-1161283,1161369-1161469,116...    28   8.8  

>09_01_0128 + 1932721-1935181,1936099-1936256
          Length = 872

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 19/81 (23%), Positives = 39/81 (48%)
 Frame = -3

Query: 725 SG*KKRSMNLEDLMADVKKTANKVRGKIKTYRTEHRTRGALEQIVGRSQDKKDPTFNSLP 546
           SG  KR  +++ +  +      K   K + Y    R +  L++ +GR +DK++      P
Sbjct: 338 SGVDKRQKHIDQIQTNSLGMQEKHTDKFERYANGSREKHFLDRHIGRGEDKQEKRSTLKP 397

Query: 545 *VRRGDDRVQPHADRLQRSLQ 483
            +  G D+ + H D  +R+++
Sbjct: 398 TI-HGRDKHKNHKDVNKRAMK 417


>09_02_0154 + 5055946-5058721,5058754-5058770
          Length = 930

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 173 IRYCMLILLK*KVIGFFFQLHYLDIMHT 90
           +RY  ++ L    + + F LHYLD+ HT
Sbjct: 589 LRYAKIVKLP-DAVTYLFNLHYLDLRHT 615


>03_01_0049 +
           418957-419040,419599-419796,419918-420040,420172-420209,
           420334-420502,421115-424273,424367-424485,424915-425116
          Length = 1363

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -1

Query: 676 SRKLPTKSEGKLKHIEQNIEQ-EEHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTD 500
           S++L   +E  ++ +    +  E HS K  ADL + K + S  S++  E+  E +    +
Sbjct: 300 SKELLEAAEETIEELRDEAKMWERHSRKLKADLEMLKKECSEKSKQQTELEAELSAAHAE 359

Query: 499 YRDRCKSRIQRQLEITGRATT 437
            RD  +  I+         TT
Sbjct: 360 -RDSYRQEIEELKSSMKEVTT 379


>03_01_0146 -
           1161005-1161133,1161239-1161283,1161369-1161469,
           1161585-1161691,1161823-1161924,1162028-1162250,
           1162343-1162382
          Length = 248

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
 Frame = -1

Query: 652 EGKLKHIEQNIEQEEHSNKSSA-DLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRDRCKSR 476
           E +L  +++++ Q  +  + S  +L     +HSTLS K  EV   + R +   R      
Sbjct: 69  ETRLDMMQEDLSQLPNKQRISLKELNKLAAKHSTLSSKVKEVGAPFTRKRFSNRSDLLGP 128

Query: 475 IQRQLEITGRATTDDELEEMLEQGNSAVFTQ-GYLDTQLRTVMRKKH 338
                +I   +  + +  E++E   + +  Q   LD    T++  KH
Sbjct: 129 DDNHAKIDVSSIANMDNREIIELQRNVIKEQDDELDKLEETIVSTKH 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,314,670
Number of Sequences: 37544
Number of extensions: 285604
Number of successful extensions: 879
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)