Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l22
(736 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L37732-1|AAA75649.1| 291|Drosophila melanogaster syntaxin 1A pr... 171 1e-42
AY061472-1|AAL29020.1| 291|Drosophila melanogaster LD43943p pro... 171 1e-42
AE014297-3456|AAF56232.1| 291|Drosophila melanogaster CG31136-P... 171 1e-42
AF145626-1|AAD38601.1| 907|Drosophila melanogaster BcDNA.GH0497... 30 3.8
AE014296-39|AAF47349.1| 907|Drosophila melanogaster CG7028-PA p... 30 3.8
Y09430-1|CAA70581.1| 4151|Drosophila melanogaster Kakapo protein. 29 6.6
U35816-4|AAB09051.1| 1972|Drosophila melanogaster nonmuscle myos... 29 6.6
U35816-3|AAB09050.1| 2012|Drosophila melanogaster nonmuscle myos... 29 6.6
U35816-2|AAB09048.1| 2017|Drosophila melanogaster nonmuscle myos... 29 6.6
U35816-1|AAB09049.1| 2057|Drosophila melanogaster nonmuscle myos... 29 6.6
M35012-1|AAA28713.1| 1972|Drosophila melanogaster protein ( D.me... 29 6.6
BT022828-1|AAY55244.1| 436|Drosophila melanogaster IP13286p pro... 29 6.6
AF200425-1|AAF24343.1| 5201|Drosophila melanogaster Short stop/K... 29 6.6
AE014134-2173|AAF53175.2| 669|Drosophila melanogaster CG31860-P... 29 6.6
AE013599-4011|AAM70805.1| 2011|Drosophila melanogaster CG15792-P... 29 6.6
AE013599-4010|AAX52688.1| 1971|Drosophila melanogaster CG15792-P... 29 6.6
AE013599-4009|AAF47311.1| 2056|Drosophila melanogaster CG15792-P... 29 6.6
AE013599-4008|AAX52687.1| 2016|Drosophila melanogaster CG15792-P... 29 6.6
AE013599-1792|AAF58320.2| 8805|Drosophila melanogaster CG18076-P... 29 6.6
AE013599-1791|AAM68562.1| 5160|Drosophila melanogaster CG18076-P... 29 6.6
AE013599-1790|AAF58319.3| 5501|Drosophila melanogaster CG18076-P... 29 6.6
AE013599-1789|AAM68561.1| 5201|Drosophila melanogaster CG18076-P... 29 6.6
AE013599-1788|AAG22268.2| 5390|Drosophila melanogaster CG18076-P... 29 6.6
AE013599-1787|AAF58317.1| 5385|Drosophila melanogaster CG18076-P... 29 6.6
AE014296-3188|AAF49130.1| 1174|Drosophila melanogaster CG9392-PA... 29 8.7
>L37732-1|AAA75649.1| 291|Drosophila melanogaster syntaxin 1A
protein.
Length = 291
Score = 171 bits (415), Expect = 1e-42
Identities = 88/123 (71%), Positives = 97/123 (78%), Gaps = 1/123 (0%)
Frame = -1
Query: 730 PSQDEKNEA*TWRILWLMSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTL 551
P DEK + L +K + GKLK IEQNIEQEE NKSSADLRIRKTQHSTL
Sbjct: 68 PQTDEKTKQ-ELEDLMADIKKNANRVRGKLKGIEQNIEQEEQQNKSSADLRIRKTQHSTL 126
Query: 550 SRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRATTDDELEEMLEQGNSAVFTQG-YL 374
SRKFVEVMTEYNRTQTDYR+RCK RIQRQLEITGR T DDELE+MLE+GNS+VFTQG +
Sbjct: 127 SRKFVEVMTEYNRTQTDYRERCKGRIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIM 186
Query: 373 DTQ 365
+TQ
Sbjct: 187 ETQ 189
>AY061472-1|AAL29020.1| 291|Drosophila melanogaster LD43943p
protein.
Length = 291
Score = 171 bits (415), Expect = 1e-42
Identities = 88/123 (71%), Positives = 97/123 (78%), Gaps = 1/123 (0%)
Frame = -1
Query: 730 PSQDEKNEA*TWRILWLMSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTL 551
P DEK + L +K + GKLK IEQNIEQEE NKSSADLRIRKTQHSTL
Sbjct: 68 PQTDEKTKQ-ELEDLMADIKKNANRVRGKLKGIEQNIEQEEQQNKSSADLRIRKTQHSTL 126
Query: 550 SRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRATTDDELEEMLEQGNSAVFTQG-YL 374
SRKFVEVMTEYNRTQTDYR+RCK RIQRQLEITGR T DDELE+MLE+GNS+VFTQG +
Sbjct: 127 SRKFVEVMTEYNRTQTDYRERCKGRIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIM 186
Query: 373 DTQ 365
+TQ
Sbjct: 187 ETQ 189
>AE014297-3456|AAF56232.1| 291|Drosophila melanogaster CG31136-PA
protein.
Length = 291
Score = 171 bits (415), Expect = 1e-42
Identities = 88/123 (71%), Positives = 97/123 (78%), Gaps = 1/123 (0%)
Frame = -1
Query: 730 PSQDEKNEA*TWRILWLMSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTL 551
P DEK + L +K + GKLK IEQNIEQEE NKSSADLRIRKTQHSTL
Sbjct: 68 PQTDEKTKQ-ELEDLMADIKKNANRVRGKLKGIEQNIEQEEQQNKSSADLRIRKTQHSTL 126
Query: 550 SRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRATTDDELEEMLEQGNSAVFTQG-YL 374
SRKFVEVMTEYNRTQTDYR+RCK RIQRQLEITGR T DDELE+MLE+GNS+VFTQG +
Sbjct: 127 SRKFVEVMTEYNRTQTDYRERCKGRIQRQLEITGRPTNDDELEKMLEEGNSSVFTQGIIM 186
Query: 373 DTQ 365
+TQ
Sbjct: 187 ETQ 189
>AF145626-1|AAD38601.1| 907|Drosophila melanogaster BcDNA.GH04978
protein.
Length = 907
Score = 29.9 bits (64), Expect = 3.8
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = -1
Query: 658 KSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYR 494
K + K K + + + + + +++ +Q+ LS KF E+M + +R D+R
Sbjct: 47 KKQKKAKKRPHRTSESTNESDAPENAKLKLSQNCGLSSKFTEIMQKASRNGADFR 101
>AE014296-39|AAF47349.1| 907|Drosophila melanogaster CG7028-PA
protein.
Length = 907
Score = 29.9 bits (64), Expect = 3.8
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = -1
Query: 658 KSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYR 494
K + K K + + + + + +++ +Q+ LS KF E+M + +R D+R
Sbjct: 47 KKQKKAKKRPHRTSESTNESDAPENAKLKLSQNCGLSSKFTEIMQKASRNGADFR 101
>Y09430-1|CAA70581.1| 4151|Drosophila melanogaster Kakapo protein.
Length = 4151
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = -3
Query: 728 QSG*KKRSMNLEDLMADVKKTANKVRGKIKTYRTEHRTRGALEQIVGRSQDKKDPTFNSL 549
Q+ KKR +L+D+++ + ++ +KT + T E + QD K +L
Sbjct: 2644 QNATKKRGSSLDDILSVAEPFWKQLNSVMKTLKDLEETLSCQEPPAAQPQDIKKQQV-AL 2702
Query: 548 P*VRRGDDRVQPHADRLQR 492
+R D+ +P ++++R
Sbjct: 2703 QEIRHEIDQTKPEVEQVRR 2721
>U35816-4|AAB09051.1| 1972|Drosophila melanogaster nonmuscle myosin-II
heavy chain protein.
Length = 1972
Score = 29.1 bits (62), Expect = 6.6
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = -1
Query: 682 LMSRKLPTKSEGKLKHIEQNIEQE-EHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQ 506
L+ +K K + K+K + NIE E H ++ + ++ L R E E + +
Sbjct: 1837 LLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEK 1896
Query: 505 TD---YRDRCKSRIQRQ 464
T Y+ C+ I+ Q
Sbjct: 1897 TQKRKYQRECEDMIESQ 1913
>U35816-3|AAB09050.1| 2012|Drosophila melanogaster nonmuscle myosin-II
heavy chain protein.
Length = 2012
Score = 29.1 bits (62), Expect = 6.6
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = -1
Query: 682 LMSRKLPTKSEGKLKHIEQNIEQE-EHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQ 506
L+ +K K + K+K + NIE E H ++ + ++ L R E E + +
Sbjct: 1877 LLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEK 1936
Query: 505 TD---YRDRCKSRIQRQ 464
T Y+ C+ I+ Q
Sbjct: 1937 TQKRKYQRECEDMIESQ 1953
>U35816-2|AAB09048.1| 2017|Drosophila melanogaster nonmuscle myosin-II
heavy chain protein.
Length = 2017
Score = 29.1 bits (62), Expect = 6.6
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = -1
Query: 682 LMSRKLPTKSEGKLKHIEQNIEQE-EHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQ 506
L+ +K K + K+K + NIE E H ++ + ++ L R E E + +
Sbjct: 1882 LLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEK 1941
Query: 505 TD---YRDRCKSRIQRQ 464
T Y+ C+ I+ Q
Sbjct: 1942 TQKRKYQRECEDMIESQ 1958
>U35816-1|AAB09049.1| 2057|Drosophila melanogaster nonmuscle myosin-II
heavy chain protein.
Length = 2057
Score = 29.1 bits (62), Expect = 6.6
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = -1
Query: 682 LMSRKLPTKSEGKLKHIEQNIEQE-EHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQ 506
L+ +K K + K+K + NIE E H ++ + ++ L R E E + +
Sbjct: 1922 LLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEK 1981
Query: 505 TD---YRDRCKSRIQRQ 464
T Y+ C+ I+ Q
Sbjct: 1982 TQKRKYQRECEDMIESQ 1998
>M35012-1|AAA28713.1| 1972|Drosophila melanogaster protein (
D.melanogaster non-musclemyosin heavy chain mRNA. ).
Length = 1972
Score = 29.1 bits (62), Expect = 6.6
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = -1
Query: 682 LMSRKLPTKSEGKLKHIEQNIEQE-EHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQ 506
L+ +K K + K+K + NIE E H ++ + ++ L R E E + +
Sbjct: 1837 LLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEK 1896
Query: 505 TD---YRDRCKSRIQRQ 464
T Y+ C+ I+ Q
Sbjct: 1897 TQKRKYQRECEDMIESQ 1913
>BT022828-1|AAY55244.1| 436|Drosophila melanogaster IP13286p
protein.
Length = 436
Score = 29.1 bits (62), Expect = 6.6
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = -1
Query: 682 LMSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQT 503
L+ ++ + K + QNI + S+K + + +HST++ + +EY
Sbjct: 95 LLRKRFAWTKDNKTDAVNQNIPNTKGSSKDFTENKGSGNKHSTVTSNEKLIRSEYYENSQ 154
Query: 502 DYRDRCKSRIQRQL 461
D KS QL
Sbjct: 155 TKSDAIKSLSNNQL 168
>AF200425-1|AAF24343.1| 5201|Drosophila melanogaster Short stop/Kakapo
long isoform protein.
Length = 5201
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = -3
Query: 728 QSG*KKRSMNLEDLMADVKKTANKVRGKIKTYRTEHRTRGALEQIVGRSQDKKDPTFNSL 549
Q+ KKR +L+D+++ + ++ +KT + T E + QD K +L
Sbjct: 3690 QNATKKRGSSLDDILSVAEPFWKQLNSVMKTLKDLEETLSCQEPPAAQPQDIKKQQV-AL 3748
Query: 548 P*VRRGDDRVQPHADRLQR 492
+R D+ +P ++++R
Sbjct: 3749 QEIRHEIDQTKPEVEQVRR 3767
>AE014134-2173|AAF53175.2| 669|Drosophila melanogaster CG31860-PA
protein.
Length = 669
Score = 29.1 bits (62), Expect = 6.6
Identities = 17/74 (22%), Positives = 31/74 (41%)
Frame = -1
Query: 682 LMSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQT 503
L+ ++ + K + QNI + S+K + + +HST++ + +EY
Sbjct: 63 LLRKRFAWTKDNKTDAVNQNIPNTKGSSKDFTENKGSGNKHSTVTSNEKLIRSEYYENSQ 122
Query: 502 DYRDRCKSRIQRQL 461
D KS QL
Sbjct: 123 TKSDAIKSLSNNQL 136
>AE013599-4011|AAM70805.1| 2011|Drosophila melanogaster CG15792-PB,
isoform B protein.
Length = 2011
Score = 29.1 bits (62), Expect = 6.6
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = -1
Query: 682 LMSRKLPTKSEGKLKHIEQNIEQE-EHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQ 506
L+ +K K + K+K + NIE E H ++ + ++ L R E E + +
Sbjct: 1876 LLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEK 1935
Query: 505 TD---YRDRCKSRIQRQ 464
T Y+ C+ I+ Q
Sbjct: 1936 TQKRKYQRECEDMIESQ 1952
>AE013599-4010|AAX52688.1| 1971|Drosophila melanogaster CG15792-PC,
isoform C protein.
Length = 1971
Score = 29.1 bits (62), Expect = 6.6
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = -1
Query: 682 LMSRKLPTKSEGKLKHIEQNIEQE-EHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQ 506
L+ +K K + K+K + NIE E H ++ + ++ L R E E + +
Sbjct: 1836 LLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEK 1895
Query: 505 TD---YRDRCKSRIQRQ 464
T Y+ C+ I+ Q
Sbjct: 1896 TQKRKYQRECEDMIESQ 1912
>AE013599-4009|AAF47311.1| 2056|Drosophila melanogaster CG15792-PA,
isoform A protein.
Length = 2056
Score = 29.1 bits (62), Expect = 6.6
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = -1
Query: 682 LMSRKLPTKSEGKLKHIEQNIEQE-EHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQ 506
L+ +K K + K+K + NIE E H ++ + ++ L R E E + +
Sbjct: 1921 LLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEK 1980
Query: 505 TD---YRDRCKSRIQRQ 464
T Y+ C+ I+ Q
Sbjct: 1981 TQKRKYQRECEDMIESQ 1997
>AE013599-4008|AAX52687.1| 2016|Drosophila melanogaster CG15792-PD,
isoform D protein.
Length = 2016
Score = 29.1 bits (62), Expect = 6.6
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = -1
Query: 682 LMSRKLPTKSEGKLKHIEQNIEQE-EHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQ 506
L+ +K K + K+K + NIE E H ++ + ++ L R E E + +
Sbjct: 1881 LLQQKANRKMDKKIKELTMNIEDERRHVDQHKEQMDKLNSRIKLLKRNLDETEEELQKEK 1940
Query: 505 TD---YRDRCKSRIQRQ 464
T Y+ C+ I+ Q
Sbjct: 1941 TQKRKYQRECEDMIESQ 1957
>AE013599-1792|AAF58320.2| 8805|Drosophila melanogaster CG18076-PH,
isoform H protein.
Length = 8805
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = -3
Query: 728 QSG*KKRSMNLEDLMADVKKTANKVRGKIKTYRTEHRTRGALEQIVGRSQDKKDPTFNSL 549
Q+ KKR +L+D+++ + ++ +KT + T E + QD K +L
Sbjct: 7294 QNATKKRGSSLDDILSVAEPFWKQLNSVMKTLKDLEETLSCQEPPAAQPQDIKKQQV-AL 7352
Query: 548 P*VRRGDDRVQPHADRLQR 492
+R D+ +P ++++R
Sbjct: 7353 QEIRHEIDQTKPEVEQVRR 7371
>AE013599-1791|AAM68562.1| 5160|Drosophila melanogaster CG18076-PC,
isoform C protein.
Length = 5160
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = -3
Query: 728 QSG*KKRSMNLEDLMADVKKTANKVRGKIKTYRTEHRTRGALEQIVGRSQDKKDPTFNSL 549
Q+ KKR +L+D+++ + ++ +KT + T E + QD K +L
Sbjct: 3649 QNATKKRGSSLDDILSVAEPFWKQLNSVMKTLKDLEETLSCQEPPAAQPQDIKKQQV-AL 3707
Query: 548 P*VRRGDDRVQPHADRLQR 492
+R D+ +P ++++R
Sbjct: 3708 QEIRHEIDQTKPEVEQVRR 3726
>AE013599-1790|AAF58319.3| 5501|Drosophila melanogaster CG18076-PA,
isoform A protein.
Length = 5501
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = -3
Query: 728 QSG*KKRSMNLEDLMADVKKTANKVRGKIKTYRTEHRTRGALEQIVGRSQDKKDPTFNSL 549
Q+ KKR +L+D+++ + ++ +KT + T E + QD K +L
Sbjct: 3990 QNATKKRGSSLDDILSVAEPFWKQLNSVMKTLKDLEETLSCQEPPAAQPQDIKKQQV-AL 4048
Query: 548 P*VRRGDDRVQPHADRLQR 492
+R D+ +P ++++R
Sbjct: 4049 QEIRHEIDQTKPEVEQVRR 4067
>AE013599-1789|AAM68561.1| 5201|Drosophila melanogaster CG18076-PE,
isoform E protein.
Length = 5201
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = -3
Query: 728 QSG*KKRSMNLEDLMADVKKTANKVRGKIKTYRTEHRTRGALEQIVGRSQDKKDPTFNSL 549
Q+ KKR +L+D+++ + ++ +KT + T E + QD K +L
Sbjct: 3690 QNATKKRGSSLDDILSVAEPFWKQLNSVMKTLKDLEETLSCQEPPAAQPQDIKKQQV-AL 3748
Query: 548 P*VRRGDDRVQPHADRLQR 492
+R D+ +P ++++R
Sbjct: 3749 QEIRHEIDQTKPEVEQVRR 3767
>AE013599-1788|AAG22268.2| 5390|Drosophila melanogaster CG18076-PB,
isoform B protein.
Length = 5390
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = -3
Query: 728 QSG*KKRSMNLEDLMADVKKTANKVRGKIKTYRTEHRTRGALEQIVGRSQDKKDPTFNSL 549
Q+ KKR +L+D+++ + ++ +KT + T E + QD K +L
Sbjct: 3879 QNATKKRGSSLDDILSVAEPFWKQLNSVMKTLKDLEETLSCQEPPAAQPQDIKKQQV-AL 3937
Query: 548 P*VRRGDDRVQPHADRLQR 492
+R D+ +P ++++R
Sbjct: 3938 QEIRHEIDQTKPEVEQVRR 3956
>AE013599-1787|AAF58317.1| 5385|Drosophila melanogaster CG18076-PG,
isoform G protein.
Length = 5385
Score = 29.1 bits (62), Expect = 6.6
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = -3
Query: 728 QSG*KKRSMNLEDLMADVKKTANKVRGKIKTYRTEHRTRGALEQIVGRSQDKKDPTFNSL 549
Q+ KKR +L+D+++ + ++ +KT + T E + QD K +L
Sbjct: 3879 QNATKKRGSSLDDILSVAEPFWKQLNSVMKTLKDLEETLSCQEPPAAQPQDIKKQQV-AL 3937
Query: 548 P*VRRGDDRVQPHADRLQR 492
+R D+ +P ++++R
Sbjct: 3938 QEIRHEIDQTKPEVEQVRR 3956
>AE014296-3188|AAF49130.1| 1174|Drosophila melanogaster CG9392-PA
protein.
Length = 1174
Score = 28.7 bits (61), Expect = 8.7
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -3
Query: 722 G*KKRSMNLEDLMADVKKTANKVRGKIKTYRTEHRTRGALEQIVGRSQDKKDP 564
G KR +++D + TA++ + R + ++R A Q GRS K P
Sbjct: 639 GLSKREQDIKDTSGKMLPTASRTPNDKDSPRLDKKSRSANRQAGGRSSSTKSP 691
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,230,295
Number of Sequences: 53049
Number of extensions: 509334
Number of successful extensions: 1496
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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