Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l22
(736 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83230-8|CAC42303.1| 291|Caenorhabditis elegans Hypothetical pr... 135 4e-32
Z83230-7|CAB05747.1| 291|Caenorhabditis elegans Hypothetical pr... 135 4e-32
AF047885-1|AAD10538.1| 291|Caenorhabditis elegans UNC-64 syntax... 135 4e-32
AB008844-1|BAA23586.1| 291|Caenorhabditis elegans syntaxin C pr... 135 4e-32
AB008843-1|BAA23585.1| 291|Caenorhabditis elegans syntaxin B pr... 135 4e-32
AB008842-1|BAA23584.1| 291|Caenorhabditis elegans syntaxin A pr... 135 4e-32
U40941-1|AAA81707.3| 306|Caenorhabditis elegans Syntaxin protei... 47 2e-05
Z69661-6|CAA93492.4| 299|Caenorhabditis elegans Hypothetical pr... 45 5e-05
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 33 0.16
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 33 0.16
Z92804-2|CAB07253.2| 321|Caenorhabditis elegans Hypothetical pr... 31 0.85
L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome regu... 30 2.0
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p... 29 4.5
Z81031-7|CAB02717.2| 267|Caenorhabditis elegans Hypothetical pr... 28 6.0
AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical ... 28 7.9
AC024208-1|AAF36054.2| 383|Caenorhabditis elegans Hypothetical ... 28 7.9
>Z83230-8|CAC42303.1| 291|Caenorhabditis elegans Hypothetical
protein F56A8.7b protein.
Length = 291
Score = 135 bits (326), Expect = 4e-32
Identities = 69/123 (56%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Frame = -1
Query: 730 PSQDEKNEA*TWRILWLMSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTL 551
P D+K + ++ ++ R K GKLK IE I+ +E +ADLRIRKTQHSTL
Sbjct: 67 PVNDQKTKEELDELMAVIKRAA-NKVRGKLKLIENAIDHDEQG-AGNADLRIRKTQHSTL 124
Query: 550 SRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRATTDDELEEMLEQGNSAVFTQGYL- 374
SR+FVEVMT+YN+TQTDYR+RCK RIQRQL+I G+ D++LEEM+E GN VFTQG +
Sbjct: 125 SRRFVEVMTDYNKTQTDYRERCKGRIQRQLDIAGKQVGDEDLEEMIESGNPGVFTQGIIT 184
Query: 373 DTQ 365
DTQ
Sbjct: 185 DTQ 187
>Z83230-7|CAB05747.1| 291|Caenorhabditis elegans Hypothetical
protein F56A8.7a protein.
Length = 291
Score = 135 bits (326), Expect = 4e-32
Identities = 69/123 (56%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Frame = -1
Query: 730 PSQDEKNEA*TWRILWLMSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTL 551
P D+K + ++ ++ R K GKLK IE I+ +E +ADLRIRKTQHSTL
Sbjct: 67 PVNDQKTKEELDELMAVIKRAA-NKVRGKLKLIENAIDHDEQG-AGNADLRIRKTQHSTL 124
Query: 550 SRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRATTDDELEEMLEQGNSAVFTQGYL- 374
SR+FVEVMT+YN+TQTDYR+RCK RIQRQL+I G+ D++LEEM+E GN VFTQG +
Sbjct: 125 SRRFVEVMTDYNKTQTDYRERCKGRIQRQLDIAGKQVGDEDLEEMIESGNPGVFTQGIIT 184
Query: 373 DTQ 365
DTQ
Sbjct: 185 DTQ 187
>AF047885-1|AAD10538.1| 291|Caenorhabditis elegans UNC-64 syntaxin
class B protein.
Length = 291
Score = 135 bits (326), Expect = 4e-32
Identities = 69/123 (56%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Frame = -1
Query: 730 PSQDEKNEA*TWRILWLMSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTL 551
P D+K + ++ ++ R K GKLK IE I+ +E +ADLRIRKTQHSTL
Sbjct: 67 PVNDQKTKEELDELMAVIKRAA-NKVRGKLKLIENAIDHDEQG-AGNADLRIRKTQHSTL 124
Query: 550 SRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRATTDDELEEMLEQGNSAVFTQGYL- 374
SR+FVEVMT+YN+TQTDYR+RCK RIQRQL+I G+ D++LEEM+E GN VFTQG +
Sbjct: 125 SRRFVEVMTDYNKTQTDYRERCKGRIQRQLDIAGKQVGDEDLEEMIESGNPGVFTQGIIT 184
Query: 373 DTQ 365
DTQ
Sbjct: 185 DTQ 187
>AB008844-1|BAA23586.1| 291|Caenorhabditis elegans syntaxin C
protein.
Length = 291
Score = 135 bits (326), Expect = 4e-32
Identities = 69/123 (56%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Frame = -1
Query: 730 PSQDEKNEA*TWRILWLMSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTL 551
P D+K + ++ ++ R K GKLK IE I+ +E +ADLRIRKTQHSTL
Sbjct: 67 PVNDQKTKEELDELMAVIKRAA-NKVRGKLKLIENAIDHDEQG-AGNADLRIRKTQHSTL 124
Query: 550 SRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRATTDDELEEMLEQGNSAVFTQGYL- 374
SR+FVEVMT+YN+TQTDYR+RCK RIQRQL+I G+ D++LEEM+E GN VFTQG +
Sbjct: 125 SRRFVEVMTDYNKTQTDYRERCKGRIQRQLDIAGKQVGDEDLEEMIESGNPGVFTQGIIT 184
Query: 373 DTQ 365
DTQ
Sbjct: 185 DTQ 187
>AB008843-1|BAA23585.1| 291|Caenorhabditis elegans syntaxin B
protein.
Length = 291
Score = 135 bits (326), Expect = 4e-32
Identities = 69/123 (56%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Frame = -1
Query: 730 PSQDEKNEA*TWRILWLMSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTL 551
P D+K + ++ ++ R K GKLK IE I+ +E +ADLRIRKTQHSTL
Sbjct: 67 PVNDQKTKEELDELMAVIKRAA-NKVRGKLKLIENAIDHDEQG-AGNADLRIRKTQHSTL 124
Query: 550 SRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRATTDDELEEMLEQGNSAVFTQGYL- 374
SR+FVEVMT+YN+TQTDYR+RCK RIQRQL+I G+ D++LEEM+E GN VFTQG +
Sbjct: 125 SRRFVEVMTDYNKTQTDYRERCKGRIQRQLDIAGKQVGDEDLEEMIESGNPGVFTQGIIT 184
Query: 373 DTQ 365
DTQ
Sbjct: 185 DTQ 187
>AB008842-1|BAA23584.1| 291|Caenorhabditis elegans syntaxin A
protein.
Length = 291
Score = 135 bits (326), Expect = 4e-32
Identities = 69/123 (56%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Frame = -1
Query: 730 PSQDEKNEA*TWRILWLMSRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTL 551
P D+K + ++ ++ R K GKLK IE I+ +E +ADLRIRKTQHSTL
Sbjct: 67 PVNDQKTKEELDELMAVIKRAA-NKVRGKLKLIENAIDHDEQG-AGNADLRIRKTQHSTL 124
Query: 550 SRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRATTDDELEEMLEQGNSAVFTQGYL- 374
SR+FVEVMT+YN+TQTDYR+RCK RIQRQL+I G+ D++LEEM+E GN VFTQG +
Sbjct: 125 SRRFVEVMTDYNKTQTDYRERCKGRIQRQLDIAGKQVGDEDLEEMIESGNPGVFTQGIIT 184
Query: 373 DTQ 365
DTQ
Sbjct: 185 DTQ 187
>U40941-1|AAA81707.3| 306|Caenorhabditis elegans Syntaxin protein 1
protein.
Length = 306
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/70 (27%), Positives = 39/70 (55%)
Frame = -1
Query: 583 LRIRKTQHSTLSRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRATTDDELEEMLEQG 404
+R + Q ++ + F +M +NR Q +Y+++ K +I L+I +D+E+E + G
Sbjct: 125 MRAKSDQVKSIYKTFENIMLNFNREQDEYKEKAKRKIVDYLKIRNMQLSDEEIENAVSSG 184
Query: 403 NSAVFTQGYL 374
N + T+G +
Sbjct: 185 NLSEVTKGVM 194
>Z69661-6|CAA93492.4| 299|Caenorhabditis elegans Hypothetical
protein F48F7.2 protein.
Length = 299
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = -1
Query: 598 KSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRATTDDELEE 419
+S + R+R+ Q L +++ +N T DY+ R R++RQL+ G+ TD+++
Sbjct: 108 QSVTEKRMRQNQLELLKDNLNKLINLFNETHQDYKSRVSVRVRRQLQTVGQDLTDEDINR 167
Query: 418 MLEQGNS 398
++E S
Sbjct: 168 IMENSGS 174
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
C35C5.1 protein.
Length = 2962
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = -1
Query: 637 HIEQNIEQEEHSNKSSADLRI--RKTQHSTLSRKFVEVMTEYNRTQTDYRDRCKSRIQRQ 464
+++ NI E + + SA+LRI RKT HS L + F E E+ + R R S +
Sbjct: 2143 NVDANIPFESENVEFSAELRIVKRKTMHSQLVKTFAE---EHTHLRDASRHRAISTVTLD 2199
Query: 463 LEITGRATTDDELEE 419
+GR+T + E+
Sbjct: 2200 SSGSGRSTRCEIFED 2214
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = -1
Query: 637 HIEQNIEQEEHSNKSSADLRI--RKTQHSTLSRKFVEVMTEYNRTQTDYRDRCKSRIQRQ 464
+++ NI E + + SA+LRI RKT HS L + F E E+ + R R S +
Sbjct: 2143 NVDANIPFESENVEFSAELRIVKRKTMHSQLVKTFAE---EHTHLRDASRHRAISTVTLD 2199
Query: 463 LEITGRATTDDELEE 419
+GR+T + E+
Sbjct: 2200 SSGSGRSTRCEIFED 2214
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = -1
Query: 637 HIEQNIEQEEHSNKSSADLRI--RKTQHSTLSRKFVEVMTEYNRTQTDYRDRCKSRIQRQ 464
+++ NI E + + SA+LRI RKT HS L + F E E+ + R R S +
Sbjct: 2143 NVDANIPFESENVEFSAELRIVKRKTMHSQLVKTFAE---EHTHLRDASRHRAISTVTLD 2199
Query: 463 LEITGRATTDDELEE 419
+GR+T + E+
Sbjct: 2200 SSGSGRSTRCEIFED 2214
>Z92804-2|CAB07253.2| 321|Caenorhabditis elegans Hypothetical
protein K05D4.3 protein.
Length = 321
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = -2
Query: 285 TWVLFILLTLSKCY*LFHS*TNNVH*YM*ISIIDLLFYKILHVDFIKIKGDWFLFSIALS 106
T++L IL K L + N Y+ + ++ K +++ DWF F+ L
Sbjct: 200 TYILLILNIWKKSKHLTSAKLNKPQNYIMCQFLLIIASKFINIPIFFFNRDWFAFNEGLD 259
Query: 105 GY-NAYLRNISY 73
GY + +L +SY
Sbjct: 260 GYISIFLIQVSY 271
>L09634-2|AAA27966.1| 504|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 3 protein.
Length = 504
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -1
Query: 385 QGYLDTQLRTVMRKKHFNS*FIVICYLYCCY 293
QG+L+++LRT + S ++IC+L CY
Sbjct: 196 QGFLNSRLRTATLRNFSESQAVLICWLLRCY 226
>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
protein R11G1.1 protein.
Length = 1656
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 13/84 (15%)
Frame = -1
Query: 679 MSRKLPTKSEGKLKHIEQNIEQEEHSNK-------------SSADLRIRKTQHSTLSRKF 539
+ +K K+E H +++ HS+K + A + R T+HS +SRK
Sbjct: 1465 LMKKKTGKNESSASHPSSSLQSSRHSSKFASKATTPRTGDATPASMTSRSTRHSVISRKI 1524
Query: 538 VEVMTEYNRTQTDYRDRCKSRIQR 467
E RD SR+ R
Sbjct: 1525 AIRRQELKAVTGSARDLSGSRVDR 1548
>Z81031-7|CAB02717.2| 267|Caenorhabditis elegans Hypothetical
protein C02D4.1 protein.
Length = 267
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = -1
Query: 610 EHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRA 443
E N S LR K Q +S + +TEYNR T R K+R Q ++ A
Sbjct: 168 EDQNIPSESLRTLKIQTLAVSLLTSKQLTEYNRWATKRRRVLKAREQEMRHLSSDA 223
>AL021481-4|CAA16335.1| 1083|Caenorhabditis elegans Hypothetical
protein Y43F4B.6 protein.
Length = 1083
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 2/110 (1%)
Frame = -1
Query: 733 RPSQDEKNEA*TWRILWLMSRKLP-TKSEG-KLKHIEQNIEQEEHSNKSSADLRIRKTQH 560
+ ++DE T R+ L ++ +K + K KH + + + K D+ I+K
Sbjct: 599 KKTEDELKNLKTQRLRLLREQRAEASKFQAFKQKHEREMAQMKSKLQKRENDVAIQKRMT 658
Query: 559 STLSRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEITGRATTDDELEEMLE 410
+TE NR R+ R R+ T + + +EE LE
Sbjct: 659 DQKLTVLQMRLTEANRANKTLRELNLKRANRKSSPTNASALQNMIEEELE 708
>AC024208-1|AAF36054.2| 383|Caenorhabditis elegans Hypothetical
protein Y75B7B.1 protein.
Length = 383
Score = 27.9 bits (59), Expect = 7.9
Identities = 28/111 (25%), Positives = 47/111 (42%)
Frame = -1
Query: 676 SRKLPTKSEGKLKHIEQNIEQEEHSNKSSADLRIRKTQHSTLSRKFVEVMTEYNRTQTDY 497
S K+P+KS LK +EQE+ K KT +T + F E + + D
Sbjct: 40 SGKIPSKSSTPLKERGLTVEQEQQKKK--------KTSENTRTEDFREQEEDAVNEEADA 91
Query: 496 RDRCKSRIQRQLEITGRATTDDELEEMLEQGNSAVFTQGYLDTQLRTVMRK 344
+ K+R + G T + + N V ++G DT+++ V+ K
Sbjct: 92 KPSKKARGKSSRRREGLVPT-----PIGQDLNVEVTSRGIDDTEMKRVVEK 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,842,313
Number of Sequences: 27780
Number of extensions: 277851
Number of successful extensions: 978
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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