Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l22
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.56 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.56 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   3.0  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   5.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 568 TQHSTLSRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEIT 452
           T+HS L+    EV+ E    Q + R      IQR+ +IT
Sbjct: 427 TEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDIT 465


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 568 TQHSTLSRKFVEVMTEYNRTQTDYRDRCKSRIQRQLEIT 452
           T+HS L+    EV+ E    Q + R      IQR+ +IT
Sbjct: 133 TEHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDIT 171


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 80  YHTHFQNCNIYHNHVFKILILIYYNI 3
           Y+ ++ N N Y+N+       +YYNI
Sbjct: 330 YNNNYNNYNNYNNNYNNNYKKLYYNI 355


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 192 IIDLLFYKILHVDFIKIKGDWFL 124
           II  LFY+   +  +K+  DW++
Sbjct: 58  IIVGLFYEFGLITHVKLSSDWYM 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,113
Number of Sequences: 438
Number of extensions: 3764
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)