Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l21
(543 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794... 28 4.2
07_01_0618 + 4577417-4577430,4577838-4577874,4578070-4578173,457... 28 4.2
06_01_0915 - 7054701-7055809,7056062-7056359 28 4.2
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 28 4.2
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 28 4.2
08_01_0947 + 9399366-9399568,9399683-9399855,9400745-9401130,940... 28 5.5
01_03_0282 - 14580875-14580891,14582126-14585855 28 5.5
05_06_0185 - 26201013-26201429,26201537-26201695,26201774-262026... 27 7.3
05_06_0183 - 26182481-26182897,26183005-26183163,26183261-261837... 27 7.3
05_03_0536 + 15138052-15138080,15138809-15139004,15139028-15139216 27 7.3
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967... 27 7.3
05_03_0553 - 15389376-15389499,15391167-15391576 27 9.7
05_03_0544 + 15239186-15239589,15242963-15243188 27 9.7
>07_03_1384 +
26177053-26177227,26178754-26178823,26179427-26179469,
26179888-26179965,26180010-26180027,26180103-26180187,
26180273-26180355,26180489-26180546,26181258-26181368,
26181769-26181826,26182005-26182101,26182585-26182620,
26183107-26183137,26183993-26184046,26184159-26184301,
26184411-26184560,26185084-26185317,26185450-26185509,
26185974-26186204,26186829-26186981
Length = 655
Score = 28.3 bits (60), Expect = 4.2
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = +1
Query: 343 LGAVGHRRHQTRFVNYTRGAISKSQFLRV 429
+G GH + +F+ + G +KS+F ++
Sbjct: 297 IGKSGHHKEMWKFIQFIEGTFTKSEFTKI 325
>07_01_0618 +
4577417-4577430,4577838-4577874,4578070-4578173,
4578512-4578707,4579559-4579628,4579849-4579952,
4580296-4580335,4581016-4581070,4581418-4581426,
4582026-4582157,4582544-4582613,4583029-4583086,
4583173-4583228,4583315-4583470,4583589-4583700,
4583782-4583923,4584141-4584216,4584306-4584401,
4584509-4584637
Length = 551
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 370 QTRFVNYTRGAISKSQFLRVDLQVLGR 450
Q RF+NY ++ QFL++ Q+ GR
Sbjct: 313 QKRFINYLVNQLAAHQFLKIACQIEGR 339
>06_01_0915 - 7054701-7055809,7056062-7056359
Length = 468
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -1
Query: 525 HRGGVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNSA 397
H VGD L N + L L+ PE + D EE RFR A
Sbjct: 177 HLAFVGDSLARNQAESLVCLLASRSTPELVHRDGEENRFRRWA 219
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 435 QIDTEELRFRNSATCIIDETGLVASVPDGPELYNPIRSSDIMKSQPNRL 289
QI E ++F S+ I T L P GP+L + R D++ + P RL
Sbjct: 237 QILEEAVKFGRSSR--ISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRL 283
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 28.3 bits (60), Expect = 4.2
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 435 QIDTEELRFRNSATCIIDETGLVASVPDGPELYNPIRSSDIMKSQPNRL 289
QI E +F S+ I L P GP+L + R +DI+ + P RL
Sbjct: 267 QIQDEAKKFGRSSR--ISSVCLYGGAPKGPQLRDLERGADIVVATPGRL 313
>08_01_0947 +
9399366-9399568,9399683-9399855,9400745-9401130,
9401791-9402090,9402177-9402266,9403213-9403336,
9403452-9403615,9404572-9404802
Length = 556
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 329 IGLYNSGPSGTDATRPVSSIIHV 397
+GLYN GPS D P+S+ V
Sbjct: 81 LGLYNDGPSRNDTQSPLSNFFGV 103
>01_03_0282 - 14580875-14580891,14582126-14585855
Length = 1248
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Frame = -1
Query: 369 VASVPDGPELYNPIRSSDI-----MKSQPNRLQIR 280
+ S+PDGP Y+ + + +I MKS P RLQ R
Sbjct: 1190 LVSLPDGPGAYSSLETLEIKYCPAMKSLPGRLQQR 1224
>05_06_0185 -
26201013-26201429,26201537-26201695,26201774-26202601,
26203483-26203605
Length = 508
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 199 RNVRRVFFVSAKRSVQLTCVAFKFQNVSNLQTIGL-TFHD 315
+NV + F SAK ++LTC +N ++L+ + L T HD
Sbjct: 400 KNVNIIGFCSAKSMIELTC--HILENATSLECLTLDTIHD 437
>05_06_0183 -
26182481-26182897,26183005-26183163,26183261-26183714,
26184370-26184485
Length = 381
Score = 27.5 bits (58), Expect = 7.3
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 199 RNVRRVFFVSAKRSVQLTCVAFKFQNVSNLQTIGL-TFHD 315
+NV + F SAK ++LTC +N ++L+ + L T HD
Sbjct: 273 KNVNIIGFCSAKSMIELTC--HILENATSLECLTLDTIHD 310
>05_03_0536 + 15138052-15138080,15138809-15139004,15139028-15139216
Length = 137
Score = 27.5 bits (58), Expect = 7.3
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -1
Query: 264 EGDTRELDRTLSGYEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 124
E D+ + D Y +Y PL L Q+ + N F+ + + A+P
Sbjct: 9 ECDSAQFDVLGQSYRQYQLQSPLLLQQQVFSPYNEFVIQQYGTAASP 55
>01_03_0284 - 14595643-14595663,14595978-14596018,14596379-14596732,
14597023-14597494,14597524-14600001
Length = 1121
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -1
Query: 396 TCIIDETGLVASVPDGPELYNPIRSSDI-----MKSQPNRLQIR 280
T +I+ + S+PDGP Y+ + S +I MKS P L+ R
Sbjct: 1039 TLMIERCKSLTSLPDGPRAYSSLESLEIKYCPAMKSLPGCLKQR 1082
>05_03_0553 - 15389376-15389499,15391167-15391576
Length = 177
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 225 YEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 124
Y +Y PL L Q+++ N F+R + A+P
Sbjct: 28 YRQYQLQSPLLLQQQVLSPYNEFVRQQYGITASP 61
>05_03_0544 + 15239186-15239589,15242963-15243188
Length = 209
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -1
Query: 249 ELDRTLSGYEEYPTYVPLFLGYQIINSENNFLRNDFISRANP 124
+ D Y +Y P+ L Q+++ N F+R + A+P
Sbjct: 20 QFDVLCQSYRQYQLQSPVLLQQQVLSPYNEFVRQQYGIAASP 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,312,318
Number of Sequences: 37544
Number of extensions: 251433
Number of successful extensions: 658
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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