Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l21
         (543 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061197-1|AAL28745.1|  418|Drosophila melanogaster LD15494p pro...    28   7.2  
AE014296-1881|AAF50113.1|  418|Drosophila melanogaster CG6321-PA...    28   7.2  
AY102686-1|AAM27515.1|  572|Drosophila melanogaster LD24274p pro...    28   9.5  
AF509505-1|AAN86815.1|  572|Drosophila melanogaster INDY transpo...    28   9.5  
AF217399-1|AAF73384.1|  206|Drosophila melanogaster unknown prot...    28   9.5  
AE014296-3064|AAN11670.1|  572|Drosophila melanogaster CG3979-PC...    28   9.5  
AE014296-3063|AAF49226.1|  572|Drosophila melanogaster CG3979-PA...    28   9.5  
AE014296-3062|AAF49227.2|  590|Drosophila melanogaster CG3979-PB...    28   9.5  

>AY061197-1|AAL28745.1|  418|Drosophila melanogaster LD15494p
           protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -1

Query: 498 FNNY-SGFLQNLIRRAVAPEYLQIDTEELRFRNSATCIIDETGLVASVPDGPELYNPIRS 322
           FNNY SG + +L    +A + +    E  + R  AT  +    L   +PD  +L +P   
Sbjct: 288 FNNYTSGIVGSLFELKLAQKQISESYEAYKERMLATTQV----LRDELPDCCKLVSPTGG 343

Query: 321 SDIMKSQPNRLQIRNVLKF 265
             I    P+RL  R  LK+
Sbjct: 344 YFIWVRIPDRLDCREFLKY 362


>AE014296-1881|AAF50113.1|  418|Drosophila melanogaster CG6321-PA
           protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
 Frame = -1

Query: 498 FNNY-SGFLQNLIRRAVAPEYLQIDTEELRFRNSATCIIDETGLVASVPDGPELYNPIRS 322
           FNNY SG + +L    +A + +    E  + R  AT  +    L   +PD  +L +P   
Sbjct: 288 FNNYTSGIVGSLFELKLAQKQISESYEAYKERMLATTQV----LRDELPDCCKLVSPTGG 343

Query: 321 SDIMKSQPNRLQIRNVLKF 265
             I    P+RL  R  LK+
Sbjct: 344 YFIWVRIPDRLDCREFLKY 362


>AY102686-1|AAM27515.1|  572|Drosophila melanogaster LD24274p
           protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 318 HCFLSGCTTRGRRAQTPPDPFRQLYTWRYF*ISIP 422
           + FL  CT RG    T P P   L TW++    +P
Sbjct: 372 YAFLRYCTRRGGPVPTGPTP--SLITWKFIQTKVP 404


>AF509505-1|AAN86815.1|  572|Drosophila melanogaster INDY
           transporter protein protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 318 HCFLSGCTTRGRRAQTPPDPFRQLYTWRYF*ISIP 422
           + FL  CT RG    T P P   L TW++    +P
Sbjct: 372 YAFLRYCTRRGGPVPTGPTP--SLITWKFIQTKVP 404


>AF217399-1|AAF73384.1|  206|Drosophila melanogaster unknown
           protein.
          Length = 206

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 318 HCFLSGCTTRGRRAQTPPDPFRQLYTWRYF*ISIP 422
           + FL  CT RG    T P P   L TW++    +P
Sbjct: 6   YAFLRYCTRRGGPVPTGPTP--SLITWKFIQTKVP 38


>AE014296-3064|AAN11670.1|  572|Drosophila melanogaster CG3979-PC,
           isoform C protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 318 HCFLSGCTTRGRRAQTPPDPFRQLYTWRYF*ISIP 422
           + FL  CT RG    T P P   L TW++    +P
Sbjct: 372 YAFLRYCTRRGGPVPTGPTP--SLITWKFIQTKVP 404


>AE014296-3063|AAF49226.1|  572|Drosophila melanogaster CG3979-PA,
           isoform A protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 318 HCFLSGCTTRGRRAQTPPDPFRQLYTWRYF*ISIP 422
           + FL  CT RG    T P P   L TW++    +P
Sbjct: 372 YAFLRYCTRRGGPVPTGPTP--SLITWKFIQTKVP 404


>AE014296-3062|AAF49227.2|  590|Drosophila melanogaster CG3979-PB,
           isoform B protein.
          Length = 590

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 318 HCFLSGCTTRGRRAQTPPDPFRQLYTWRYF*ISIP 422
           + FL  CT RG    T P P   L TW++    +P
Sbjct: 390 YAFLRYCTRRGGPVPTGPTP--SLITWKFIQTKVP 422


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,401,624
Number of Sequences: 53049
Number of extensions: 426222
Number of successful extensions: 1513
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2074444800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)