Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l18
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253 32 0.56
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388 32 0.56
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 30 2.3
06_03_0757 + 24267599-24268882 29 4.0
10_07_0161 - 13674631-13675433,13675793-13675862 28 9.2
09_02_0336 - 7397745-7398308,7398813-7400723 28 9.2
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389... 28 9.2
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 28 9.2
>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
Length = 326
Score = 31.9 bits (69), Expect = 0.56
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = -2
Query: 653 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 474
CI+ + C +R+ + + E + +TYE+ E LK ++ E + + K +A
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289
Query: 473 LSTLEMTQ 450
TL++ Q
Sbjct: 290 AETLDVKQ 297
>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
Length = 327
Score = 31.9 bits (69), Expect = 0.56
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = -2
Query: 653 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 474
CI+ + C +R+ + + E + +TYE+ E LK ++ E + + K +A
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289
Query: 473 LSTLEMTQ 450
TL++ Q
Sbjct: 290 AETLDVKQ 297
>01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = -2
Query: 689 YEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKT-YELAEFDLKNLSSLESYET 513
YE +N +++++ K ++ T+ + + S K +KT Y + +L+ +L+ E
Sbjct: 2187 YEERLSSNEWQAALRLRKYKSKELDTLMKRLKSSSKSEKTDYSVKIQELQKQLALDEEEA 2246
Query: 512 LKIKLALSKYMAML 471
KI+ +K+ A +
Sbjct: 2247 GKIQCTHAKFSAKI 2260
>06_03_0757 + 24267599-24268882
Length = 427
Score = 29.1 bits (62), Expect = 4.0
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -3
Query: 502 NWRSANTWLCSAPWK*PSRCWK 437
+WR A W+C PW + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369
>10_07_0161 - 13674631-13675433,13675793-13675862
Length = 290
Score = 27.9 bits (59), Expect = 9.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = -3
Query: 502 NWRSANTWLCSAPWK*PSRCWK 437
+WR A W+C PW W+
Sbjct: 229 SWRPAGPWVCFNPWPAQQLAWR 250
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = -2
Query: 647 KMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLS 468
+MK +K N V + EI + K + + FD+K+L ++I +KY LS
Sbjct: 616 EMKSMKLNDVWDLEEIPKGAKTETKKFLSSNFDMKDLGEASYVLGIEIHRDRTKYALGLS 675
Query: 467 TLEMTQPLLEIF 432
+ +L+ F
Sbjct: 676 QKTYIEKVLKKF 687
>06_03_0099 +
16633928-16638213,16638299-16638386,16638823-16638950,
16640008-16640278
Length = 1590
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -2
Query: 194 TEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYDMDLSDFSITEVE 30
TE N + + N I+K +K+TTR DD + Q M+LS+ T E
Sbjct: 525 TEDDANLASSSKNTMISKHHNTVDQKSTTRKDDSRNRSQK--IMELSEVRGTNTE 577
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -2
Query: 608 TEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLE 438
TE+ S+++ K E+ E D+ + S + YET ++ + SK LS L +P +
Sbjct: 84 TELQLSNDRQSKPDEVTEDDMPSTSGRQLYET-EVPASSSKKHCSLSPLPAYEPAFD 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,604,869
Number of Sequences: 37544
Number of extensions: 365349
Number of successful extensions: 970
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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