Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l14
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.58 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.3  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    26   4.1  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   7.1  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   7.1  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   7.1  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    25   9.4  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 26/91 (28%), Positives = 45/91 (49%)
 Frame = +3

Query: 30  SSSNITAMFSSNSILKLSVVVVGQVKSLGSTMYSGMSRPRTTSPSPIWIFWISVASLE*P 209
           ++SN     S++     S+   G   SL ST  +    P +TS + I I   S +S +  
Sbjct: 160 TNSNPLPTTSTSCTTSTSIPPTGGSSSL-STPITPTVPPTSTSSTSIPIPPTSTSSTD-T 217

Query: 210 SAQPHVSTRTNCSSMDLMGTEHSSTLIFPVT 302
           ++ P  +T T+C++   + T  SS+L  P+T
Sbjct: 218 NSSPLPTTSTSCTTSTSIPTGGSSSLSTPIT 248



 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 210 SAQPHVSTRTNC-SSMDLMGTEHSSTLIFPVTGASNAQTVEVRSANTEKCGTVPAARTDA 386
           S+ P +ST T+C +S  +  T +S+T + P    +++ T  + + N     +VP   T  
Sbjct: 382 SSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSST-PLTTTNCTTSTSVPYTSTPV 440

Query: 387 PDISHRTPFCT 419
                 T  CT
Sbjct: 441 TSTPLATTNCT 451


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 30/137 (21%), Positives = 52/137 (37%), Gaps = 4/137 (2%)
 Frame = +3

Query: 30   SSSNITAMFSSNSILKLSVVVVGQVK----SLGSTMYSGMSRPRTTSPSPIWIFWISVAS 197
            SSS +++  SS + L  S+ V   V     S GS   S +     ++ S  W    S ++
Sbjct: 877  SSSVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSSSA 936

Query: 198  LE*PSAQPHVSTRTNCSSMDLMGTEHSSTLIFPVTGASNAQTVEVRSANTEKCGTVPAAR 377
            +    A     T ++ +S     +E   +     TG+S +       + +       A+ 
Sbjct: 937  ITSSVAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVATASA 996

Query: 378  TDAPDISHRTPFCTGRS 428
            TD+   S      TG S
Sbjct: 997  TDSSTSSIAAASVTGSS 1013


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 389 GHLAPHTLLYWAFLMSILYKELASG 463
           G L  ++LL+W  LM +LY  +  G
Sbjct: 80  GKLRNNSLLFWKSLMGLLYSTMVCG 104


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 30  SSSNITAMFSSNSILKLSVVVVGQVKSLGSTMYSGMSRPRTTSPS 164
           SS+  +  FSS+S + +S ++ G   S  S+  S  S   TT+P+
Sbjct: 509 SSNRRSRKFSSSSRVSVSNLLAGSPPSPSSSTKSASSSYSTTTPA 553


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +3

Query: 36  SNITAMFSSNSILKL--SVVVVGQVKSLGSTMYSGMSRPRTTSPS 164
           S  T+  SSNS+L    S +   + K    T+ S   RPRT SPS
Sbjct: 387 SRHTSSDSSNSLLSTFRSWLFDPKQKHTADTLSSSAIRPRTPSPS 431


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 607 PFEMPLRARQAVSPGYPGLLETYHG 533
           P+  P  +   ++P Y G L  YHG
Sbjct: 518 PYLQPYNSASQLAPSYVGSLPQYHG 542


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +3

Query: 465 NSGLLRNDLFILHFSVYIILTNTP 536
           N+GL+   + +LH + ++++T +P
Sbjct: 193 NNGLMYKPMIVLHSNEFLLITGSP 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,055
Number of Sequences: 5004
Number of extensions: 59241
Number of successful extensions: 172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)