Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l14
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0454 + 23786984-23786986,23787062-23787136,23787242-237873... 50 1e-06
12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971... 48 6e-06
12_02_0781 + 23105554-23106855,23107191-23107511,23107581-231076... 36 0.028
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584... 30 1.4
08_02_0588 + 19036509-19039235 24 2.8
10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089... 24 3.6
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793... 29 4.2
05_05_0334 + 24156532-24156565,24156681-24156782,24157145-241572... 29 4.2
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 29 4.2
04_04_0311 - 24309411-24309525,24309627-24309841 29 4.2
12_02_0114 - 13805646-13805665,13806062-13806194,13806633-138069... 28 7.4
07_03_1507 - 27228032-27228742 28 7.4
06_02_0239 + 13384451-13387124,13387234-13387631 28 7.4
05_04_0043 + 17450999-17451181,17451353-17451416,17451642-174517... 28 7.4
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947... 27 9.7
>11_06_0454 +
23786984-23786986,23787062-23787136,23787242-23787316,
23787534-23787606,23787965-23788009,23788398-23788509,
23788640-23788706,23789010-23789054,23790138-23790193,
23790280-23790455,23790584-23790710,23791384-23791426
Length = 298
Score = 50.4 bits (115), Expect = 1e-06
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 3/176 (1%)
Frame = -2
Query: 547 ETYHGVFVNIMYTLKCNMKRSFLNKPLFTTCQFFVQYRHQERP-VQKGVRCEMSGASVRA 371
E+Y+G V + Y LK + R + + C+ F + P + ++ E+
Sbjct: 118 ESYNGTNVRLRYILKVTIGRPYATSVV--ECRDFCVRNYTPLPSINNSIKMEV------- 168
Query: 370 AGTVPHFSVFADLTSTVCALDAPVTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDA 191
G + + + + L + GKI + IK++EL++ R E+ G G +
Sbjct: 169 -GIEDCLHIEFEYSKSKYHLKDVIVGKIYFLLVRIKIKNMELEIRRRESTGSGPGTYIET 227
Query: 190 TEIQNIQIGEGDVVRGRDIPLYMVLPRLFTCPTTTTLN--FKIEFELNIAVIFEDD 29
+ ++ +G VRG IP+ + L PT +N F +++ LN+ ++ E+D
Sbjct: 228 ETLAKFELMDGAPVRGESIPVRLFLTPYELTPTYRNINNKFNVKYYLNLVLVDEED 283
>12_02_0439 +
19096711-19096713,19096819-19096893,19097037-19097111,
19097225-19097297,19097536-19097580,19098217-19098328,
19098794-19098866,19099178-19099222,19100216-19100271,
19100370-19100545,19101289-19101476
Length = 306
Score = 48.0 bits (109), Expect = 6e-06
Identities = 37/176 (21%), Positives = 76/176 (43%), Gaps = 3/176 (1%)
Frame = -2
Query: 547 ETYHGVFVNIMYTLKCNMKRSFLNKPLFTTCQFFVQYRHQERP-VQKGVRCEMSGASVRA 371
E+Y+G V + Y LK + R+ + + F + P + ++ E+
Sbjct: 118 ESYNGTNVRLRYILKVTISRNIMGMGSIVEFREFCVRNYSPAPTINNSIKMEV------- 170
Query: 370 AGTVPHFSVFADLTSTVCALDAPVTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDA 191
G + + + + L + GKI + IK++EL++ R E+ G +
Sbjct: 171 -GIEDCLHIEFEYSKSKYHLKDVIIGKIYFLLVRIKIKNMELEVRRRESTGAGSSAYVET 229
Query: 190 TEIQNIQIGEGDVVRGRDIPLYMVLPRLFTCPTTTTLN--FKIEFELNIAVIFEDD 29
+ ++ +G VRG IP+ + L P+ +N F +++ LN+ ++ E+D
Sbjct: 230 ETLAKFELMDGAPVRGESIPVRLFLTPYELTPSYRNINNKFSVKYYLNLVLVDEED 285
>12_02_0781 + 23105554-23106855,23107191-23107511,23107581-23107667,
23107907-23108302,23108327-23108500,23108600-23108764,
23108857-23109151,23109319-23109446,23109681-23109986,
23110531-23110591,23110676-23110915,23111251-23111372
Length = 1198
Score = 35.9 bits (79), Expect = 0.028
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Frame = -2
Query: 604 FEMPLRARQAVSPGYPGLLETYHGVFVNIMYTL----KCNMKRSFLNKPLFTTCQFFVQY 437
F + L + +SPG G++ +Y G+ +N+++ +C++ ++ + V+Y
Sbjct: 901 FVITLLPQGTLSPGVAGMVLSY-GLSLNMLFLFSIQNQCSLANQIISVERISQYMDIVKY 959
Query: 436 RHQERPVQKGVRCEMSGA-SVRAAGTVPHFSVFADLTSTVCALDAPVTGKIRVD 278
PV KG+ C G + G S L + + L P GKI +D
Sbjct: 960 TQDASPVLKGISCTFQGGDKIGIVGRTG--SGKTTLINAIFRLVEPSGGKITID 1011
>01_01_0758 +
5843702-5843874,5844021-5844083,5844174-5844290,
5847180-5847945
Length = 372
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = -1
Query: 647 SSPR*DPCRHHRDSI*DATAGPSGCISRISWSTGDL 540
S P P HHR A +G SG +R W TG L
Sbjct: 150 SGPALSPLNHHRAFGGGAESGSSGAATRARWVTGTL 185
>08_02_0588 + 19036509-19039235
Length = 908
Score = 24.2 bits (50), Expect(2) = 2.8
Identities = 5/5 (100%), Positives = 5/5 (100%)
Frame = +1
Query: 85 WWWWG 99
WWWWG
Sbjct: 23 WWWWG 27
Score = 23.4 bits (48), Expect(2) = 2.8
Identities = 5/5 (100%), Positives = 5/5 (100%)
Frame = +1
Query: 82 AWWWW 96
AWWWW
Sbjct: 18 AWWWW 22
>10_08_0190 +
15607241-15607409,15607932-15607990,15608883-15608991,
15609394-15609551,15609976-15610044,15610158-15610847,
15611112-15611629,15611725-15611789,15613010-15613089,
15613894-15613998,15614768-15614881,15615029-15615168,
15615257-15615385,15615903-15616055,15616186-15616327
Length = 899
Score = 24.2 bits (50), Expect(2) = 3.6
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Frame = +1
Query: 85 WWWWGK*RV---SAAPCTAGCLGRAPRL 159
WWWW V A P G G+ PRL
Sbjct: 19 WWWWWAVAVVGCGAQPVVVGSYGQ-PRL 45
Score = 23.0 bits (47), Expect(2) = 3.6
Identities = 7/18 (38%), Positives = 8/18 (44%)
Frame = +1
Query: 43 SRRCSVQTLF*S*AWWWW 96
+RR V WWWW
Sbjct: 4 ARRAKVAAALGVVVWWWW 21
>06_02_0251 -
13478902-13478952,13478989-13479055,13479168-13479379,
13480144-13481540,13481574-13482432,13482537-13482836
Length = 961
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Frame = -3
Query: 462 PLASSLYSIDIKNAQYRRVCGARC-----PVRRCALRAQCRTSLCSQISPP 325
PL + + ++ +RR GARC P RR + + + R +L + SPP
Sbjct: 44 PLGLAAAAAAVRVRSWRRFAGARCEVALLPARRISAQPRRRNALREKASPP 94
>05_05_0334 + 24156532-24156565,24156681-24156782,24157145-24157274,
24157361-24157445,24157525-24157666,24157762-24157894,
24157993-24158254,24158331-24158519,24158596-24158721,
24158809-24159195,24159288-24159398,24159629-24160423,
24161114-24161255,24161350-24162518,24162609-24162818,
24163010-24163478,24164037-24164464
Length = 1637
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 214 ADGYSRDATEIQNIQIGEGDVVRGR 140
AD YS + +++ +Q+ EGDV+ G+
Sbjct: 1166 ADNYSDEGFDLETLQLHEGDVLTGK 1190
>05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 287 DLSSDRCIQRADGGGEICEHREVRHCAR 370
D+ D+C+Q+ DGGG+ E + RH R
Sbjct: 978 DIPDDKCLQKDDGGGD--EAKTERHYKR 1003
>04_04_0311 - 24309411-24309525,24309627-24309841
Length = 109
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 296 SDRCIQRADGGGEICEHREVRHCARSAHRRTGHLAPHTLLYWAFLMSI 439
+DRC+QR E+C R R+ S R + L PH L+ F+ S+
Sbjct: 56 TDRCVQRMRARRELCSWR-TRNLWGSLRRGSTSLKPHDSLH-QFIPSV 101
>12_02_0114 -
13805646-13805665,13806062-13806194,13806633-13806975,
13807375-13807583,13807995-13808243
Length = 317
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -3
Query: 375 ALRAQCRTSLCSQISP---PPSARWMHLSLERSELTSA 271
+L A ++CS+IS PP + W HLS R+ + +A
Sbjct: 182 SLEAHYAKTVCSRISENYYPPLSAWSHLSSGRASVNAA 219
>07_03_1507 - 27228032-27228742
Length = 236
Score = 27.9 bits (59), Expect = 7.4
Identities = 22/86 (25%), Positives = 33/86 (38%)
Frame = +3
Query: 132 GMSRPRTTSPSPIWIFWISVASLE*PSAQPHVSTRTNCSSMDLMGTEHSSTLIFPVTGAS 311
G PR SP P+ I+ I V +A+ +S +CS + ST P T
Sbjct: 9 GFLSPRPRSPPPVAIYSIPVLRSSVSAARRSLSPSDSCSRRAPLSPPSPSTFGSPPTSLR 68
Query: 312 NAQTVEVRSANTEKCGTVPAARTDAP 389
+ + V S + P+A P
Sbjct: 69 TSFRLGVISIGFAAFPSTPSASPFRP 94
>06_02_0239 + 13384451-13387124,13387234-13387631
Length = 1023
Score = 27.9 bits (59), Expect = 7.4
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = +2
Query: 188 GCIPRVAVSAAACLNAH*L*FNGLDGYRALVNSDLSSDRCIQRADGGGEICEHREVRHCA 367
G IP V A L L N LDG + N+ + D + DG ++C + +
Sbjct: 584 GIIPATLVKMQA-LRLLNLSMNDLDGL--VPNNGIFKDHSVVYLDGNPKLCYSNMLCYYI 640
Query: 368 RSAHRR--TGHLAPHTLLYWAFLMSILYKELASGEQWL 475
S+HRR +A T A + ++ L +WL
Sbjct: 641 HSSHRRKMAVAIAVGTAAMAAITIVVIISMLLLPRKWL 678
>05_04_0043 +
17450999-17451181,17451353-17451416,17451642-17451700,
17452331-17452406,17452469-17452597,17453524-17453611,
17453711-17453966,17454308-17454423,17454569-17454789,
17454977-17455005,17455167-17455273,17455778-17456015
Length = 521
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 249 SMDLMGTEHSSTLIFPVTGASNAQTVEVRSANTEKCGTVPAARTDAP 389
S D +G H +++ ++ ASN +TV R + + T +R D P
Sbjct: 360 SADFIGINHYTSVY--ISDASNGETVGPRDYSADMAATFRISRNDTP 404
>04_04_1465 +
33794225-33794389,33794471-33794597,33794669-33794799,
33795153-33795254,33795337-33795420,33795504-33795731,
33795934-33796038,33796376-33796731,33797146-33797303,
33797399-33797505,33797852-33798061
Length = 590
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/44 (34%), Positives = 29/44 (65%)
Frame = +3
Query: 30 SSSNITAMFSSNSILKLSVVVVGQVKSLGSTMYSGMSRPRTTSP 161
+SS + +M S+N++L+ V +VGQ+ G++M + + T+SP
Sbjct: 335 ASSRLLSMKSANALLE--VPLVGQMLEAGTSMQAILISDMTSSP 376
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,977,294
Number of Sequences: 37544
Number of extensions: 450418
Number of successful extensions: 1472
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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