Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l14
         (647 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023306-1|AAY55722.1|  295|Drosophila melanogaster IP10134p pro...   197   9e-51
AE014296-3406|AAF51632.1|  295|Drosophila melanogaster CG4074-PA...   197   9e-51
BT023502-1|AAY84902.1|  478|Drosophila melanogaster LD29140p pro...    40   0.004
AL021106-6|CAA15940.1|  478|Drosophila melanogaster EG:63B12.8 p...    40   0.004
AE014298-275|AAF45679.1|  478|Drosophila melanogaster CG14804-PA...    40   0.004
AY047574-1|AAK77306.1|  438|Drosophila melanogaster GH08526p pro...    29   5.4  
AE014297-2422|AAF55479.3| 2938|Drosophila melanogaster CG33547-P...    29   5.4  
AE014296-3739|AAF51879.2|  438|Drosophila melanogaster CG11115-P...    29   5.4  
BT023959-1|ABB36463.1|  876|Drosophila melanogaster AT19777p pro...    28   9.5  
AY089287-1|AAL90025.1|  726|Drosophila melanogaster AT08349p pro...    28   9.5  
AE014134-544|AAF51156.1|  874|Drosophila melanogaster CG17258-PA...    28   9.5  
AE013599-1448|AAM68666.1| 1740|Drosophila melanogaster CG8487-PA...    28   9.5  
AE013599-1447|AAF58532.2| 1983|Drosophila melanogaster CG8487-PB...    28   9.5  

>BT023306-1|AAY55722.1|  295|Drosophila melanogaster IP10134p
           protein.
          Length = 295

 Score =  197 bits (481), Expect = 9e-51
 Identities = 105/221 (47%), Positives = 139/221 (62%), Gaps = 8/221 (3%)
 Frame = -2

Query: 640 PGKIPVGITEIPFEMPLRARQAVSPGYPGLLETYHGVFVNIMYTLKCNMKRSFLNKPLFT 461
           PGK+  G +E  FE+PL  ++   P    L ETYHGVF+N+ Y L C +KR+FL K    
Sbjct: 61  PGKLSAGRSEFHFELPLVCKK--EPRI--LYETYHGVFINVNYQLTCTVKRNFLGKATTK 116

Query: 460 TCQFFVQYRHQ--ERPVQKGVRCEMS------GASVRAAGTVPHFSVFADLTSTVCALDA 305
             QF VQY+        +K V   +S       AS +   ++P F +   L  +   +  
Sbjct: 117 IQQFCVQYKPVPLSEDSKKVVPFSLSPDSLQKNASAKERLSMPRFLITGRLDRSEFCVTT 176

Query: 304 PVTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQNIQIGEGDVVRGRDIPLY 125
           P+TG I V      IKSIE+QLVRVETCGC +GYS+DATEIQ IQI +G+V+   ++P++
Sbjct: 177 PITGSITVQHTEAAIKSIEMQLVRVETCGCDEGYSKDATEIQTIQIADGNVLPKLELPIH 236

Query: 124 MVLPRLFTCPTTTTLNFKIEFELNIAVIFEDDYLVTENFPI 2
           MVLPRLFTCPT  T NFKIEFELN+ V+F++DY V+ENF I
Sbjct: 237 MVLPRLFTCPTLLTKNFKIEFELNLIVVFKEDYTVSENFKI 277


>AE014296-3406|AAF51632.1|  295|Drosophila melanogaster CG4074-PA
           protein.
          Length = 295

 Score =  197 bits (481), Expect = 9e-51
 Identities = 105/221 (47%), Positives = 139/221 (62%), Gaps = 8/221 (3%)
 Frame = -2

Query: 640 PGKIPVGITEIPFEMPLRARQAVSPGYPGLLETYHGVFVNIMYTLKCNMKRSFLNKPLFT 461
           PGK+  G +E  FE+PL  ++   P    L ETYHGVF+N+ Y L C +KR+FL K    
Sbjct: 61  PGKLSAGRSEFHFELPLVCKK--EPRI--LYETYHGVFINVNYQLTCTVKRNFLGKATTK 116

Query: 460 TCQFFVQYRHQ--ERPVQKGVRCEMS------GASVRAAGTVPHFSVFADLTSTVCALDA 305
             QF VQY+        +K V   +S       AS +   ++P F +   L  +   +  
Sbjct: 117 IQQFCVQYKPVPLSEDSKKVVPFSLSPDSLQKNASAKERLSMPRFLITGRLDRSEFCVTT 176

Query: 304 PVTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQNIQIGEGDVVRGRDIPLY 125
           P+TG I V      IKSIE+QLVRVETCGC +GYS+DATEIQ IQI +G+V+   ++P++
Sbjct: 177 PITGSITVQHTEAAIKSIEMQLVRVETCGCDEGYSKDATEIQTIQIADGNVLPKLELPIH 236

Query: 124 MVLPRLFTCPTTTTLNFKIEFELNIAVIFEDDYLVTENFPI 2
           MVLPRLFTCPT  T NFKIEFELN+ V+F++DY V+ENF I
Sbjct: 237 MVLPRLFTCPTLLTKNFKIEFELNLIVVFKEDYTVSENFKI 277


>BT023502-1|AAY84902.1|  478|Drosophila melanogaster LD29140p
           protein.
          Length = 478

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = -2

Query: 301 VTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQNIQIGEGDVVRGRDIPLYM 122
           + GKI      + IK +E+ +++ E+ G       +   I   +I +G  V+G  IP+ +
Sbjct: 188 IIGKIYFLLVRIKIKHMEIAIIKKESTGTGPTMFNENETIAKYEIMDGAPVKGESIPIRV 247

Query: 121 VLPRLFTCPTTTTLN--FKIEFELNIAVIFEDD 29
            L      PT   +N  F +++ LN+ ++  +D
Sbjct: 248 FLAGYNLTPTMRDINKKFSVKYFLNLVLMDTED 280


>AL021106-6|CAA15940.1|  478|Drosophila melanogaster EG:63B12.8
           protein.
          Length = 478

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = -2

Query: 301 VTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQNIQIGEGDVVRGRDIPLYM 122
           + GKI      + IK +E+ +++ E+ G       +   I   +I +G  V+G  IP+ +
Sbjct: 188 IIGKIYFLLVRIKIKHMEIAIIKKESTGTGPTMFNENETIAKYEIMDGAPVKGESIPIRV 247

Query: 121 VLPRLFTCPTTTTLN--FKIEFELNIAVIFEDD 29
            L      PT   +N  F +++ LN+ ++  +D
Sbjct: 248 FLAGYNLTPTMRDINKKFSVKYFLNLVLMDTED 280


>AE014298-275|AAF45679.1|  478|Drosophila melanogaster CG14804-PA
           protein.
          Length = 478

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = -2

Query: 301 VTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQNIQIGEGDVVRGRDIPLYM 122
           + GKI      + IK +E+ +++ E+ G       +   I   +I +G  V+G  IP+ +
Sbjct: 188 IIGKIYFLLVRIKIKHMEIAIIKKESTGTGPTMFNENETIAKYEIMDGAPVKGESIPIRV 247

Query: 121 VLPRLFTCPTTTTLN--FKIEFELNIAVIFEDD 29
            L      PT   +N  F +++ LN+ ++  +D
Sbjct: 248 FLAGYNLTPTMRDINKKFSVKYFLNLVLMDTED 280


>AY047574-1|AAK77306.1|  438|Drosophila melanogaster GH08526p
           protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 366 AQCRTSLCSQISPPPSARWMHLSLER 289
           A  R  L SQ+ PPP+A+  H SL R
Sbjct: 229 AHFRDQLMSQVDPPPAAKTQHNSLIR 254


>AE014297-2422|AAF55479.3| 2938|Drosophila melanogaster CG33547-PA
           protein.
          Length = 2938

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 269 RALVNSDLSSDRCIQR--ADGGGEICEHREVRHCARSAHRRTGHLAPHTLLYWAFLMSIL 442
           +A V  D +   C++   ADG G IC +  +R CAR   + T  L  + +++   L    
Sbjct: 59  KAGVELDATCHICLKTKFADGVGHICHYCNIRCCARCGGKVT--LRSNKVIWVCILCRKK 116

Query: 443 YKELASGEQWL 475
            + L+   QW+
Sbjct: 117 QELLSKTGQWI 127


>AE014296-3739|AAF51879.2|  438|Drosophila melanogaster CG11115-PA
           protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 366 AQCRTSLCSQISPPPSARWMHLSLER 289
           A  R  L SQ+ PPP+A+  H SL R
Sbjct: 229 AHFRDQLMSQVDPPPAAKTQHNSLIR 254


>BT023959-1|ABB36463.1|  876|Drosophila melanogaster AT19777p
           protein.
          Length = 876

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 569 RYSLTGPQWHLKWNLCDAYRDL 634
           R +++  +WHLKW + D +R L
Sbjct: 819 RQAISHHEWHLKWKVLDCWRRL 840


>AY089287-1|AAL90025.1|  726|Drosophila melanogaster AT08349p
           protein.
          Length = 726

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 357 RTSLCSQISPPPSARWMHLSLERSELTSARYPSSP 253
           + S    +S P +  W+ ++ + SELT+A  P SP
Sbjct: 267 KASAAPAVSSPSAENWILVNNKDSELTTASRPQSP 301


>AE014134-544|AAF51156.1|  874|Drosophila melanogaster CG17258-PA
           protein.
          Length = 874

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 569 RYSLTGPQWHLKWNLCDAYRDL 634
           R +++  +WHLKW + D +R L
Sbjct: 817 RQAISHHEWHLKWKVLDCWRRL 838


>AE013599-1448|AAM68666.1| 1740|Drosophila melanogaster CG8487-PA,
            isoform A protein.
          Length = 1740

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 357  RTSLCSQISPPPSARWMHLSLERSELTSARYPSSP 253
            + S    +S P +  W+ ++ + SELT+A  P SP
Sbjct: 1282 KASAAPAVSSPSAENWILVNNKDSELTTASRPQSP 1316


>AE013599-1447|AAF58532.2| 1983|Drosophila melanogaster CG8487-PB,
            isoform B protein.
          Length = 1983

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 357  RTSLCSQISPPPSARWMHLSLERSELTSARYPSSP 253
            + S    +S P +  W+ ++ + SELT+A  P SP
Sbjct: 1282 KASAAPAVSSPSAENWILVNNKDSELTTASRPQSP 1316


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,571,629
Number of Sequences: 53049
Number of extensions: 741516
Number of successful extensions: 2293
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2289
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2744900550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)