Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l14
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68220-4|CAA92489.2| 408|Caenorhabditis elegans Hypothetical pr... 42 3e-04
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 34 0.100
Z70204-4|CAA94114.2| 437|Caenorhabditis elegans Hypothetical pr... 29 2.1
AY305832-1|AAR11977.1| 437|Caenorhabditis elegans nuclear recep... 29 2.1
AY305831-1|AAR11976.1| 437|Caenorhabditis elegans nuclear recep... 29 2.1
AF273774-1|AAG15123.1| 433|Caenorhabditis elegans nuclear recep... 29 2.1
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 28 5.0
U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone... 27 8.7
AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear recep... 27 8.7
AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormo... 27 8.7
>Z68220-4|CAA92489.2| 408|Caenorhabditis elegans Hypothetical
protein T20D3.7 protein.
Length = 408
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Frame = -2
Query: 301 VTGKIRVDECSVPIKSIELQLVRVETCGCADGYSRDATEIQNIQIGEGDVVRGRDIPLYM 122
+ GKI + IK +E+ +++ E G +++ + +I +G VRG IP+ +
Sbjct: 242 IVGKIYFLLVRIKIKYMEIAILKTEVVGSGPNTFKESETVAKFEIMDGAPVRGESIPIRL 301
Query: 121 VLPRLFTCPTTTTL--NFKIEFELNIAVIFEDD 29
L P+ + F +++ LN+ ++ E+D
Sbjct: 302 FLAGYDLAPSMRDVGKKFSVKYFLNLVLVDEED 334
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 33.9 bits (74), Expect = 0.100
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Frame = +3
Query: 30 SSSNITAMFSSNSILKLSVVVVGQVKSLGSTMYSGMSRPRTTSPSPIWIF--WISVASLE 203
SS + + S +S + G ++GS+ SG+S +S P S S
Sbjct: 1848 SSGTVGSTISESSTTASASSQTGSTVTMGSSSTSGVSTSSASSTQPQMSTSQGSSAGSTV 1907
Query: 204 *PSAQPHVSTRTNCSSMDLMGTEHSSTLIFPVTGASNAQTVEVRSANTEKCGTVPAARTD 383
S VST T SS MG+ S T+ ++ +S A + ++ +T G+
Sbjct: 1908 ASSTAGLVSTSTVPSSTGTMGSTSSGTVGSTISESSTAASTSSQTGSTVTIGSTSGTNPS 1967
Query: 384 AP 389
+P
Sbjct: 1968 SP 1969
Score = 31.9 bits (69), Expect = 0.40
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 2/129 (1%)
Frame = +3
Query: 30 SSSNITAMFSSNSILKLSVVVVGQVKSLGSTMYSGMSRPRTTSPSPIWIF--WISVASLE 203
SS + + S +S + G ++GS+ SG+S +S P S S
Sbjct: 1609 SSGTVGSTISESSTTASASSQTGSTVTMGSSSTSGVSTSSASSTQPQMSTSQGSSAGSTV 1668
Query: 204 *PSAQPHVSTRTNCSSMDLMGTEHSSTLIFPVTGASNAQTVEVRSANTEKCGTVPAARTD 383
S VST T SS MG+ S T+ ++ +S A + ++ +T G+ +
Sbjct: 1669 ASSTTGLVSTSTVPSSTGTMGSTSSGTVGSTISESSTAASASSQTGSTVTMGSSSTSGVS 1728
Query: 384 APDISHRTP 410
S P
Sbjct: 1729 TSSASSGQP 1737
Score = 30.7 bits (66), Expect = 0.93
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 2/129 (1%)
Frame = +3
Query: 30 SSSNITAMFSSNSILKLSVVVVGQVKSLGSTMYSGMSRPRTTSPSPIWIF--WISVASLE 203
SS + + S +S + G ++GS+ SG+S +S P S S
Sbjct: 1526 SSGTVGSTISESSTTASASSQTGSTVTMGSSSTSGVSTSSASSTQPQMSTSQGSSAGSTV 1585
Query: 204 *PSAQPHVSTRTNCSSMDLMGTEHSSTLIFPVTGASNAQTVEVRSANTEKCGTVPAARTD 383
S VST T SS MG+ S T+ ++ +S + ++ +T G+ +
Sbjct: 1586 ASSTAGLVSTSTVPSSTGTMGSTSSGTVGSTISESSTTASASSQTGSTVTMGSSSTSGVS 1645
Query: 384 APDISHRTP 410
S P
Sbjct: 1646 TSSASSTQP 1654
>Z70204-4|CAA94114.2| 437|Caenorhabditis elegans Hypothetical
protein C11G6.4a protein.
Length = 437
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -3
Query: 486 HFSISHCSPLASSLY-SIDIKNAQYRRVCGARCPVR---RCALRAQCRTSLCSQISPPPS 319
HF C A+ S+ + A R G C ++ RC RA CR + C + S
Sbjct: 19 HFGAEACRACAAFFRRSVALNKAYVCRAMGT-CVIQKNVRCMCRA-CRFTKCIAVGMRKS 76
Query: 318 ARWMHLSLERSELTSARYPSSP 253
A H L S+ TS+ S+P
Sbjct: 77 AVQRHRELFASQETSSESSSNP 98
>AY305832-1|AAR11977.1| 437|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 437
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -3
Query: 486 HFSISHCSPLASSLY-SIDIKNAQYRRVCGARCPVR---RCALRAQCRTSLCSQISPPPS 319
HF C A+ S+ + A R G C ++ RC RA CR + C + S
Sbjct: 19 HFGAEACRACAAFFRRSVALNKAYVCRAMGT-CVIQKNVRCMCRA-CRFTKCIAVGMRKS 76
Query: 318 ARWMHLSLERSELTSARYPSSP 253
A H L S+ TS+ S+P
Sbjct: 77 AVQRHRELFASQETSSESSSNP 98
>AY305831-1|AAR11976.1| 437|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 437
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -3
Query: 486 HFSISHCSPLASSLY-SIDIKNAQYRRVCGARCPVR---RCALRAQCRTSLCSQISPPPS 319
HF C A+ S+ + A R G C ++ RC RA CR + C + S
Sbjct: 19 HFGAEACRACAAFFRRSVALNKAYVCRAMGT-CVIQKNVRCMCRA-CRFTKCIAVGMRKS 76
Query: 318 ARWMHLSLERSELTSARYPSSP 253
A H L S+ TS+ S+P
Sbjct: 77 AVQRHRELFASQETSSESSSNP 98
>AF273774-1|AAG15123.1| 433|Caenorhabditis elegans nuclear receptor
NHR-28 protein.
Length = 433
Score = 29.5 bits (63), Expect = 2.1
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = -3
Query: 486 HFSISHCSPLASSLY-SIDIKNAQYRRVCGARCPVR---RCALRAQCRTSLCSQISPPPS 319
HF C A+ S+ + A R G C ++ RC RA CR + C + S
Sbjct: 15 HFGAEACRACAAFFRRSVALNKAYVCRAMGT-CVIQKNVRCMCRA-CRFTKCIAVGMRKS 72
Query: 318 ARWMHLSLERSELTSARYPSSP 253
A H L S+ TS+ S+P
Sbjct: 73 AVQRHRELFASQETSSESSSNP 94
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 402 GARCPVRRCALRAQCRTSLCSQISP 328
G RC + L+AQC C Q+SP
Sbjct: 1438 GTRCEIEGSCLKAQCVHGECIQLSP 1462
>U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone
receptor-like proteinprotein.
Length = 579
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 502 CNMKRSFLNKPLFTTCQFFVQYRHQERPVQKGVRC 398
CN ++F + L +F Q +++ PV KGVRC
Sbjct: 28 CNGCKTFFRRALVNNREFVCQ-GNKDCPVNKGVRC 61
>AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear receptor
NHR-47 protein.
Length = 579
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 502 CNMKRSFLNKPLFTTCQFFVQYRHQERPVQKGVRC 398
CN ++F + L +F Q +++ PV KGVRC
Sbjct: 28 CNGCKTFFRRALVNNREFVCQ-GNKDCPVNKGVRC 61
>AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 47 protein.
Length = 579
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 502 CNMKRSFLNKPLFTTCQFFVQYRHQERPVQKGVRC 398
CN ++F + L +F Q +++ PV KGVRC
Sbjct: 28 CNGCKTFFRRALVNNREFVCQ-GNKDCPVNKGVRC 61
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,300,799
Number of Sequences: 27780
Number of extensions: 364856
Number of successful extensions: 1203
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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