Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l12
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    30   0.41 
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      28   1.7  
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    28   1.7  
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy...    27   2.2  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   3.9  
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple...    27   3.9  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   8.9  
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    25   8.9  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    25   8.9  

>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = -1

Query: 606 KDVNLSWRILHQITDQIIVHLS----VVGHCFEEKAKL 505
           +D N++W I+H+I  +++  +S    +  +CF +K K+
Sbjct: 197 EDSNMAWSIIHKIKTEVVAPISEKKELKNYCFTQKRKI 234


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 245 IIVNIYGWILNKVTIKVSSFVMMSKYRFKTFFCLCFFIKINFF 117
           +I++ Y   LN V   V +FV +S   F +F C  +FIK+  F
Sbjct: 263 LIISAY-IALNAVASVVIAFVFLSLIFFISFICPIWFIKLQRF 304


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 555 IVHLSVVGH--CFEEKAKLIEVWLIQQWTV*HYESL 454
           + H +VVG     EE  K+++ W +  W   HY  +
Sbjct: 251 LFHGNVVGKFLVLEENKKIVQTWRLSSWPTGHYAEI 286


>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 213 VEYP-TVNINNYFSYVLIPSKYSTFKMHYERIFGTMFWHF 329
           V YP  +N  NY  Y+L+PS    + M + R+     WH+
Sbjct: 299 VVYPDNINFFNYVDYLLVPS--LVYSMEFPRV-AHFRWHY 335


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = -3

Query: 688 CTQNEQCTAGYYCNTYTYVCNKCINCQQGREFVMENTTPNNR 563
           C+     +  +   T T + NK + C    +  + +TTPN +
Sbjct: 493 CSPKTHVSFLFLLKTATQLLNKLVECLHSSDLGLNDTTPNEK 534


>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
           beta subunit Tfg2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 520 RESKADRSMANTTMDGLTLRELNVSKYVN 434
           RES+   SM +T + G    E NVS  +N
Sbjct: 99  RESETSSSMKSTALVGTVAHECNVSPVIN 127


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 153 KSFESIFRHHNKTRYFYSYFVEYPTVNINNYFSYVLIPS 269
           +S E + RH+N  RY +    + P +  N++ S   +P+
Sbjct: 355 QSSEELARHNNVFRYIHHNQKQLPEIAFNSFKSRFQMPT 393


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 296 IMHFKCRIFRRNKDI*KIIVNIYGWILNKVTIKVSSFVMMSKY 168
           I H +  IF+R+  + K IVN+  +++   T K   F + S Y
Sbjct: 122 IHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPY 164


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 180 HNKTRYFYSYFVEYPTV 230
           HN +++ + YF +YPTV
Sbjct: 197 HNLSKFNHRYFTKYPTV 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,022,470
Number of Sequences: 5004
Number of extensions: 62560
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)