Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l12
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667     30   1.7  
02_04_0142 + 20167876-20169108                                         28   7.1  
01_06_1171 - 35089719-35090336,35090596-35090715,35090851-350911...    28   7.1  

>01_05_0216 + 19386132-19386314,19386794-19388092,19388440-19388667
          Length = 569

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/74 (24%), Positives = 27/74 (36%)
 Frame = -3

Query: 676 EQCTAGYYCNTYTYVCNKCINCQQGREFVMENTTPNNRSNNCTSFGCGPLLRRESKADRS 497
           EQ +A    +  + VC  C      R  ++        +  C   GCG +LR+E   D  
Sbjct: 397 EQASASSSVDVDSVVCKNCKRYISNRTSLLHEAYCVRHNVVCMHDGCGVVLRKEEATDHV 456

Query: 496 MANTTMDGLTLREL 455
             N        RE+
Sbjct: 457 HCNKCGQAFQQREM 470


>02_04_0142 + 20167876-20169108
          Length = 410

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +1

Query: 622 IYYKHMCMYYNNNQLCI 672
           ++Y+ MC Y+N N++C+
Sbjct: 213 LHYEEMCSYHNRNKMCL 229


>01_06_1171 -
           35089719-35090336,35090596-35090715,35090851-35091108,
           35091934-35092563
          Length = 541

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 344 KLLHSTQSTKENKTNHNASTSRDNPN 421
           +LL STQS KE KT  N   S  +PN
Sbjct: 204 RLLSSTQSLKEFKTQVNTLASLQHPN 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,861,654
Number of Sequences: 37544
Number of extensions: 310343
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)