Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l12
         (762 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF199022-1|AAF43627.1|  508|Drosophila melanogaster tetratricope...    31   2.3  
AE014134-2730|AAN10946.1|  464|Drosophila melanogaster CG4599-PB...    31   2.3  
AE014134-2729|AAF53540.1|  508|Drosophila melanogaster CG4599-PA...    31   2.3  
BT001725-1|AAN71480.1|  508|Drosophila melanogaster RE69804p pro...    30   4.0  
AE014296-2069|AAS65018.1| 1799|Drosophila melanogaster CG33265-P...    29   5.2  
AF214523-1|AAF24502.1|  809|Drosophila melanogaster SP460 protein.     29   6.9  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    29   6.9  

>AF199022-1|AAF43627.1|  508|Drosophila melanogaster
           tetratricopeptide repeat protein 2 protein.
          Length = 508

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +1

Query: 622 IYYKHMCMYYNNN-QLCIVHFE--CTLLGEH*XAVEIRSNC 735
           IY + +C+YY +N    I+HFE   TL  +H  + ++RS C
Sbjct: 234 IYVRGLCLYYTDNLDKGILHFERALTLDPDHYKSKQMRSKC 274


>AE014134-2730|AAN10946.1|  464|Drosophila melanogaster CG4599-PB,
           isoform B protein.
          Length = 464

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +1

Query: 622 IYYKHMCMYYNNN-QLCIVHFE--CTLLGEH*XAVEIRSNC 735
           IY + +C+YY +N    I+HFE   TL  +H  + ++RS C
Sbjct: 190 IYVRGLCLYYTDNLDKGILHFERALTLDPDHYKSKQMRSKC 230


>AE014134-2729|AAF53540.1|  508|Drosophila melanogaster CG4599-PA,
           isoform A protein.
          Length = 508

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +1

Query: 622 IYYKHMCMYYNNN-QLCIVHFE--CTLLGEH*XAVEIRSNC 735
           IY + +C+YY +N    I+HFE   TL  +H  + ++RS C
Sbjct: 234 IYVRGLCLYYTDNLDKGILHFERALTLDPDHYKSKQMRSKC 274


>BT001725-1|AAN71480.1|  508|Drosophila melanogaster RE69804p
           protein.
          Length = 508

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = +1

Query: 622 IYYKHMCMYYNNN-QLCIVHFE--CTLLGEH*XAVEIRSNC 735
           IY + +C+YY +N    I+HFE   TL  +H  + ++RS C
Sbjct: 234 IYVRGLCLYYADNLDKGILHFERALTLDPDHYKSKQMRSKC 274


>AE014296-2069|AAS65018.1| 1799|Drosophila melanogaster CG33265-PA
            protein.
          Length = 1799

 Score = 29.5 bits (63), Expect = 5.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 670  CTAGYYCNTYTYVCNKCINCQQGREFVME 584
            C+ GY    +   C+K I+C  G E +ME
Sbjct: 1626 CSTGYQYLPHPTNCHKYIHCSNGHELIME 1654


>AF214523-1|AAF24502.1|  809|Drosophila melanogaster SP460 protein.
          Length = 809

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 697 PTGCTQNEQCTAGYYCNTYTYVC 629
           P  CT N+QC    +CN  T  C
Sbjct: 358 PPECTSNDQCADNRFCNLDTKTC 380


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
             protein.
          Length = 23015

 Score = 29.1 bits (62), Expect = 6.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 697   PTGCTQNEQCTAGYYCNTYTYVC 629
             P  CT N+QC    +CN  T  C
Sbjct: 22564 PPECTSNDQCADNRFCNLDTKTC 22586



 Score = 28.7 bits (61), Expect = 9.2
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -3

Query: 700 RPTGCTQNEQCTAGYYCNTYTYVCNKCINCQQGREFVMEN 581
           +  GC+    C  G  C   +Y  N    C+QG E   EN
Sbjct: 872 KTVGCSDANPCATGETCVQDSYTGNSVCICRQGYERNSEN 911


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,499,809
Number of Sequences: 53049
Number of extensions: 617099
Number of successful extensions: 1632
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3499501170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)