Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l12
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p...    31   0.68 
U37548-4|AAA79200.2|  373|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AF016678-11|AAB66147.1|  343|Caenorhabditis elegans Serpentine r...    29   2.7  
AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z67737-2|CAA91537.3|  400|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    29   4.8  
Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF038604-6|AAB92014.2|  243|Caenorhabditis elegans Hypothetical ...    28   6.3  
AF016439-2|AAB65897.1|  176|Caenorhabditis elegans Hypothetical ...    28   6.3  
U97009-10|AAC69033.1|  533|Caenorhabditis elegans Udp-glucuronos...    28   8.3  
U88309-1|AAB42331.3|  395|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AL021503-9|CAA16417.2|  572|Caenorhabditis elegans Hypothetical ...    28   8.3  

>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
            protein F48E3.8a protein.
          Length = 2427

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 688  CTQNE-QCTAGYYCNTYTYVCNKCINCQQ 605
            C Q++ QC  GYY  T T V +KC NC Q
Sbjct: 1677 CIQDQCQCRNGYYAQTETCVADKC-NCVQ 1704


>U37548-4|AAA79200.2|  373|Caenorhabditis elegans Hypothetical
           protein C54D2.1 protein.
          Length = 373

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 688 CTQNEQCTAGYYCNTYTYVC 629
           C  N QC AG YCN+ T  C
Sbjct: 338 CNSNNQCLAGSYCNSGTCRC 357


>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical
           protein E01G6.1 protein.
          Length = 1391

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 688 CTQNEQCTAGYYCNTYTYVC 629
           C++ + C AGY CN  +Y C
Sbjct: 440 CSEEDPCPAGYECNDSSYCC 459


>AF016678-11|AAB66147.1|  343|Caenorhabditis elegans Serpentine
           receptor, class i protein46 protein.
          Length = 343

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 187 KLDTFIVTLLSIQP*ILTIIFHMSLFLRNILHLKCIMNVFLVQCFGISA 333
           KLD F   L S+Q   L + FH+S+  + I  L    + + V C G++A
Sbjct: 56  KLDNFKYFLFSLQVSSLVMDFHLSILCQPIYFL----SAYTVNCIGVAA 100


>AF100664-1|AAC68985.1|  580|Caenorhabditis elegans Hypothetical
           protein M57.2 protein.
          Length = 580

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
 Frame = -3

Query: 703 VRPTGCTQNEQCTAGYYCNTYTYVCNKCINCQQGREFV-MENTTP----NNRSNNCTSFG 539
           +RP   T  E  +A ++ N  T V ++ +  Q    FV  ENTT     ++ S N TS  
Sbjct: 260 LRPESHTPIELISASFHGNNTTLVFSRAVTIQFLLTFVDTENTTGWRAFSSTSPNPTSSR 319

Query: 538 CGPLLRRESKADRSMANTTMDGLTLRELNVSKYVNL 431
               L        +   T ++ ++  ELN   YVNL
Sbjct: 320 VWQYLSDTPLRVVTSNPTDLENISWTELNEQPYVNL 355


>Z67737-2|CAA91537.3|  400|Caenorhabditis elegans Hypothetical
           protein T01H10.2 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -2

Query: 266 RNKDI*KIIVNIYGWILNKVTIKVSSFVMMSKYRFKTFFCLC 141
           R+ D   + VN  G+I + ++++VSS   M+ Y+F   +  C
Sbjct: 145 RDPDFRMVCVNSNGYIYDYISVRVSSSCPMNVYKFPFDYQTC 186


>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = -3

Query: 691 GCTQNEQCTAGYYCNTYTYVCNKCIN---CQQGREFVMENTTPNNRS 560
           GCT + QC  G++C       + C N   C +G E    N     +S
Sbjct: 28  GCTHSMQCGRGFFCQEGACRKDSCSNDLQCDEGEECRPGNVNGRQKS 74


>Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical
           protein F35E2.1 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 189 TRYFYSY-FVEYPT-VNINNYFSYVLIPSKYSTFKMHYERIFGTMFWHFSRLIINY 350
           T  F  Y F+ YP   N  N   Y L   ++S   M   RIF T+F++F+ +I+N+
Sbjct: 165 TTIFIIYAFLNYPFGENNKNDVCYTL---RFSN-GMELVRIFSTLFFNFAAIIVNF 216


>Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical
           protein F16D3.6 protein.
          Length = 341

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 189 TRYFYSY-FVEYPT-VNINNYFSYVLIPSKYSTFKMHYERIFGTMFWHFSRLIINY 350
           T  F  Y F+ YP   N  N   Y L   ++S   M   RIF T+F++F+ +I+N+
Sbjct: 165 TTIFIIYAFLNYPFGENNKNDVCYTL---RFSN-GMELVRIFSTLFFNFAAIIVNF 216


>AF038604-6|AAB92014.2|  243|Caenorhabditis elegans Hypothetical
           protein B0546.5 protein.
          Length = 243

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +3

Query: 189 TRYFYSY-FVEYPT-VNINNYFSYVLIPSKYSTFKMHYERIFGTMFWHFSRLIINY 350
           T  F  Y F+ YP   N  N   Y L   ++S   M   RIF T+F++F+ +I+N+
Sbjct: 165 TTIFIIYAFLNYPFGENNKNDVCYTL---RFSN-GMELVRIFSTLFFNFAAIIVNF 216


>AF016439-2|AAB65897.1|  176|Caenorhabditis elegans Hypothetical
           protein R02F11.1 protein.
          Length = 176

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 694 TGCTQNEQCTAGYYCNTYTYVC 629
           TG   N+ C  G+ CNT  Y C
Sbjct: 121 TGPCVNQVCPTGFMCNTNNYCC 142


>U97009-10|AAC69033.1|  533|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein11 protein.
          Length = 533

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 167 RFKTFFCLCFFIKINF 120
           R  TF CLCF +K+N+
Sbjct: 2   RLLTFSCLCFLLKVNY 17


>U88309-1|AAB42331.3|  395|Caenorhabditis elegans Hypothetical
           protein T23B3.4 protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 521 SKQWPTTERCTII*SVIWCSILHDKFTSL 607
           S++W T +R  I  S++WC       TSL
Sbjct: 96  SRKWQTKKRALITISLVWCFSFSANLTSL 124


>AL021503-9|CAA16417.2|  572|Caenorhabditis elegans Hypothetical
           protein Y68A4A.5 protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = -3

Query: 685 TQNEQCTAGYYCNTYTYVCNK-CINCQQ 605
           ++   CTA Y C   TY C + C  C Q
Sbjct: 210 SEKATCTANYDCRRMTYDCRRLCHTCSQ 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,628,656
Number of Sequences: 27780
Number of extensions: 355724
Number of successful extensions: 1101
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)