Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l12
(762 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 22 5.4
AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective... 22 5.4
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 22 7.1
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 21 9.4
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 21 9.4
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 9.4
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 21 9.4
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 21 9.4
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 21 9.4
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 21 9.4
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 21 9.4
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 21 9.4
AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor prot... 21 9.4
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 22.2 bits (45), Expect = 5.4
Identities = 6/20 (30%), Positives = 13/20 (65%)
Frame = -3
Query: 451 VSKYVNLHVIVWIIATCAGV 392
+S+ V +++W++A C V
Sbjct: 168 LSRAVKFIIVIWLLALCLAV 187
>AB238796-1|BAE93398.1| 128|Apis mellifera Queen brain-selective
protein-1 protein.
Length = 128
Score = 22.2 bits (45), Expect = 5.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -3
Query: 670 CTAGYYCNTYTYVCNKCINC 611
C G C+ CNKCI C
Sbjct: 79 CAEGMQCS-----CNKCIGC 93
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase
protein.
Length = 615
Score = 21.8 bits (44), Expect = 7.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 13 NGSLFLRMTNLYFSTS 60
NG LFL + N + +TS
Sbjct: 34 NGELFLALLNFFVATS 49
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 21.4 bits (43), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 501 EVWLIQQWTV*HYESLM 451
EVWLIQQ +E LM
Sbjct: 41 EVWLIQQEREREHERLM 57
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.4 bits (43), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 501 EVWLIQQWTV*HYESLM 451
EVWLIQQ +E LM
Sbjct: 41 EVWLIQQEREREHERLM 57
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.4 bits (43), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 501 EVWLIQQWTV*HYESLM 451
EVWLIQQ +E LM
Sbjct: 41 EVWLIQQEREREHERLM 57
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 501 EVWLIQQWTV*HYESLM 451
EVWLIQQ +E LM
Sbjct: 41 EVWLIQQEREREHERLM 57
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 501 EVWLIQQWTV*HYESLM 451
EVWLIQQ +E LM
Sbjct: 41 EVWLIQQEREREHERLM 57
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.4 bits (43), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 501 EVWLIQQWTV*HYESLM 451
EVWLIQQ +E LM
Sbjct: 41 EVWLIQQEREREHERLM 57
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 21.4 bits (43), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 501 EVWLIQQWTV*HYESLM 451
EVWLIQQ +E LM
Sbjct: 41 EVWLIQQEREREHERLM 57
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 21.4 bits (43), Expect = 9.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 501 EVWLIQQWTV*HYESLM 451
EVWLIQQ +E LM
Sbjct: 41 EVWLIQQEREREHERLM 57
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 21.4 bits (43), Expect = 9.4
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = -3
Query: 673 QCTAGYYCNTYTYVCNKCINCQ 608
QC G C Y+ KC C+
Sbjct: 222 QCKYGNNCEIDMYMRRKCQECR 243
>AB095514-1|BAC76336.1| 72|Apis mellifera ecdyson receptor
protein.
Length = 72
Score = 21.4 bits (43), Expect = 9.4
Identities = 8/22 (36%), Positives = 10/22 (45%)
Frame = -3
Query: 673 QCTAGYYCNTYTYVCNKCINCQ 608
QC G C Y+ KC C+
Sbjct: 19 QCKYGNNCEIDMYMRRKCQECR 40
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,015
Number of Sequences: 438
Number of extensions: 4423
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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