Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l11
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    28   1.7  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.2  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    27   2.9  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    27   3.9  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   5.1  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   5.1  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    26   5.1  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    26   6.8  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    26   6.8  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   6.8  
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac...    25   9.0  

>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 343 HCLRCCWRRHSSLLSHDHVVV 405
           HCLRC + RH  +    HVVV
Sbjct: 173 HCLRCLFLRHVFIYPRFHVVV 193


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 318 EGSGALKQSEFPSWASNKEYLAYNSPSSTFLG 223
           EG    + S F +W    E  AYN+ +S F G
Sbjct: 230 EGCSGSRNSTFDAWVEYAEDSAYNTNTSLFYG 261


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = -2

Query: 456 NEDILEEDERRLSDDNDNYNMIVAEQARVATPTATETMLPWKRE-EAEGSGALKQSEFPS 280
           N DILE  ERR  D  D    +   + + A PT       +KR     G      S   S
Sbjct: 249 NTDILESYERRRGDVKDRAEALTITKFKTAKPT-------YKRPGMGPGGKDATASSSSS 301

Query: 279 WASNKEYLAYNSPSST 232
           ++S +E  A    SST
Sbjct: 302 FSSKREEAAAEPSSST 317


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 458 GTKLYVDLSLLHGKDFSTAVGSISSGVLTYCFII 559
           GT  Y+   ++ GK+ +  V   S GVLTY F++
Sbjct: 247 GTLDYLPPEMVEGKEHTEKVDLWSLGVLTYEFLV 280


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -2

Query: 483 DRSTYNFVPNEDILEEDERRLSDDNDNYNMIVAEQARVATPTATE 349
           D +  N   NE+++EED    +   +  N +VA++ R A   A +
Sbjct: 380 DENGNNESENEEVIEEDNLNRNVIAEAQNQVVADEERNAVARAAQ 424


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 122 NIIINIFLKHVPKYFDRA*KLH 57
           N+++NIF K  P Y+++A K+H
Sbjct: 824 NVVLNIFKKQTP-YYNQADKVH 844


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/54 (20%), Positives = 29/54 (53%)
 Frame = +2

Query: 494 GKDFSTAVGSISSGVLTYCFIILALRGLNPGRLANWFKSELLFSLCEDVGLTSL 655
           G D    +   S+G ++  +I+   + ++P  +  W +++++F+  +D G  S+
Sbjct: 78  GSDGVLKIADTSTGRVSSKWIVDKNKEISPYSVVQWIENDMVFATGDDNGCVSV 131


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = -2

Query: 540 KTPEEILPTAVEKSLPWRRDRSTYNFVPNEDILEEDERRLSDDNDNYNMIVAEQARVATP 361
           + PE +L  A+ +     R R T +       LEE+++R  D+ D Y   V++    ATP
Sbjct: 257 RCPESVLQQALHEINIEFRSRLTDS---ERKALEEEDKREKDELDGYMRPVSQ----ATP 309

Query: 360 TATE 349
           T T+
Sbjct: 310 TNTD 313


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 528 EILPTAVEKSLPWRRDRSTYNFVPNEDILEEDERRLS 418
           E+L  A + + PW  +++ +N   +  +L +  RRL+
Sbjct: 288 ELLENAEKATSPWLNEQNVWNVAESFAVLRDSIRRLA 324


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 507 EKSLPWRRDRSTYNFVPNEDILEEDERRLSDDNDNYNMI 391
           + SL  RRD STY F    +  +E++  L  +    N +
Sbjct: 258 DPSLSIRRDSSTYYFSNVNETYDEEDSDLDSETSTVNWV 296


>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -2

Query: 510 VEKSLPWRRDRSTYNFVPNEDILEEDERRLSDDNDNYNMIVAEQAR 373
           ++ ++  ++D +TY  V N    E+DE  L    +N+  +  E+ +
Sbjct: 117 IDDTIISKQDENTYYIVTNAACSEKDEANLKKHIENWKGVELERVQ 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,877
Number of Sequences: 5004
Number of extensions: 54728
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)