Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l11
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0034 - 9124414-9124599,9124677-9124769,9125022-9125098,912...    29   4.1  
10_06_0114 - 10911713-10911724,10913642-10913772,10913869-109142...    29   5.4  
01_06_1254 + 35761046-35761162,35761332-35761416,35761877-357620...    29   5.4  
03_01_0273 - 2107778-2108772,2108857-2109043,2109121-2110575,211...    28   7.1  
08_01_0663 + 5721902-5723176,5724162-5724233,5724405-5724560,572...    28   9.4  
01_01_0964 + 7587369-7587529,7587857-7588184                           28   9.4  

>11_03_0034 -
           9124414-9124599,9124677-9124769,9125022-9125098,
           9125725-9126401,9126423-9126653,9127760-9127826,
           9127843-9127993
          Length = 493

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = -2

Query: 462 VPNEDILEEDERRLSDDNDNYNMIVAEQARVATPTATETMLPWKR 328
           VP EDI + D     DD++N ++   ++ R     AT+T  P K+
Sbjct: 30  VPPEDISDNDV--ADDDDENSSLTRRDEKRARVKKATKTTFPLKK 72


>10_06_0114 -
           10911713-10911724,10913642-10913772,10913869-10914229,
           10914339-10915081,10918916-10918964,10919063-10919334,
           10919426-10919519,10919618-10920000,10920504-10920575,
           10920656-10920778,10920875-10921048,10921115-10921579,
           10921662-10921839
          Length = 1018

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = -2

Query: 495 PWRRDRSTYNFVPN-EDILEEDERRLSDDNDNYNMIVAEQARVATPTATETMLPW 334
           P+ +  S    +PN +D + E    ++ D   YN   A Q R   PTA++    W
Sbjct: 384 PYVQTFSRVGSMPNIDDYMIELNTNVTPDQRRYNAPTASQRRYNAPTASQVAAIW 438


>01_06_1254 +
           35761046-35761162,35761332-35761416,35761877-35762017,
           35762118-35762206,35762519-35762701,35763509-35763697,
           35763808-35763938,35764023-35764125,35765123-35765308
          Length = 407

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/44 (25%), Positives = 27/44 (61%)
 Frame = -2

Query: 447 ILEEDERRLSDDNDNYNMIVAEQARVATPTATETMLPWKREEAE 316
           +LEE+  +++ +++  +    ++ +  TP  T+  + WKR++AE
Sbjct: 251 LLEEESEKIAIEDEIEDQ--RKKVKTTTPMTTDLFMEWKRKKAE 292


>03_01_0273 -
           2107778-2108772,2108857-2109043,2109121-2110575,
           2110670-2111251
          Length = 1072

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 671 NPRPATKKSVQRLRIKKIVVHF 606
           NPRP+T +  QRL ++   +HF
Sbjct: 799 NPRPSTSRGTQRLYVRLNTLHF 820


>08_01_0663 +
           5721902-5723176,5724162-5724233,5724405-5724560,
           5724655-5724844,5725173-5725255
          Length = 591

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 468 NFVPNEDILEEDERRLSDDNDNYNMIVAEQARVAT 364
           +F+  +D L EDER  SDD D+   I     ++ T
Sbjct: 305 SFLCRDDFLHEDERGSSDDEDDNKTISDHYDKMVT 339


>01_01_0964 + 7587369-7587529,7587857-7588184
          Length = 162

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 649 FFVAGRGFGSECNTAVVAVPSDFPLFAVLLKYLVDIIV 762
           FFVA     S C+  V+ VPS     A  L  + D+++
Sbjct: 55  FFVAANAAVSACSLVVLLVPSSTSKLAARLLLMADVVL 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,048,849
Number of Sequences: 37544
Number of extensions: 322376
Number of successful extensions: 938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)