Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l11
(766 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC093746-1|AAH93746.2| 778|Homo sapiens PDZ domain containing R... 31 3.4
BC093744-1|AAH93744.1| 778|Homo sapiens PDZ domain containing R... 31 3.4
BC040922-1|AAH40922.1| 587|Homo sapiens PDZRN4 protein protein. 31 3.4
AK131554-1|BAD18688.1| 776|Homo sapiens protein ( Homo sapiens ... 31 3.4
AB005297-1|BAA23647.1| 1584|Homo sapiens BAI 1 protein. 31 3.4
Z95400-2|CAI42741.1| 720|Homo sapiens kelch-like 4 (Drosophila)... 31 4.5
Z95400-1|CAI42740.1| 718|Homo sapiens kelch-like 4 (Drosophila)... 31 4.5
BC146677-1|AAI46678.1| 718|Homo sapiens kelch-like 4 (Drosophil... 31 4.5
BC142652-1|AAI42653.1| 718|Homo sapiens kelch-like 4 (Drosophil... 31 4.5
BC016966-1|AAH16966.1| 262|Homo sapiens ANGEL2 protein protein. 31 4.5
AY946008-1|AAY23347.1| 1841|Homo sapiens peripheral clock protei... 31 4.5
AY946007-1|AAY23346.1| 522|Homo sapiens peripheral clock protei... 31 4.5
AL592449-5|CAH71920.1| 544|Homo sapiens novel protein protein. 31 4.5
AL035424-2|CAI42085.1| 720|Homo sapiens kelch-like 4 (Drosophil... 31 4.5
AL035424-1|CAI42084.1| 718|Homo sapiens kelch-like 4 (Drosophil... 31 4.5
AK092189-1|BAC03824.1| 178|Homo sapiens protein ( Homo sapiens ... 31 4.5
AF284766-1|AAK49442.1| 720|Homo sapiens kelch-like protein KLHL... 31 4.5
AF284765-1|AAK49441.1| 718|Homo sapiens kelch-like protein KLHL... 31 4.5
AB051474-1|BAB21778.1| 728|Homo sapiens KIAA1687 protein protein. 31 4.5
M77235-1|AAA58644.1| 2016|Homo sapiens sodium channel alpha subu... 30 7.9
EF629347-1|ABR15764.1| 1998|Homo sapiens Nav1.5 Na+ channel prot... 30 7.9
EF629346-1|ABR15763.1| 2016|Homo sapiens Nav1.5 Na+ channel prot... 30 7.9
EF179185-1|ABN05288.1| 2015|Homo sapiens sodium channel, voltage... 30 7.9
DQ784809-1|ABQ01244.1| 2016|Homo sapiens sodium channel protein ... 30 7.9
AY148488-1|AAN61120.1| 2015|Homo sapiens cardiac sodium channel ... 30 7.9
AY038064-1|AAK74065.1| 2015|Homo sapiens voltage-gated sodium ch... 30 7.9
AF482988-1|AAO91669.1| 2015|Homo sapiens cardiac sodium channel ... 30 7.9
AB208866-1|BAD92103.1| 1576|Homo sapiens voltage-gated sodium ch... 30 7.9
AB158470-1|BAD12085.1| 1962|Homo sapiens TTX-resistant sodium ch... 30 7.9
AB158469-1|BAD12084.1| 2016|Homo sapiens TTX-resistant sodium ch... 30 7.9
>BC093746-1|AAH93746.2| 778|Homo sapiens PDZ domain containing RING
finger 4 protein.
Length = 778
Score = 31.5 bits (68), Expect = 3.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 438 EDERRLSDDNDNYNMIVAEQARVATPTATETMLPWKREEAEGS 310
EDER + N M+ E PTA E P K+EE EG+
Sbjct: 238 EDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGT 280
>BC093744-1|AAH93744.1| 778|Homo sapiens PDZ domain containing RING
finger 4 protein.
Length = 778
Score = 31.5 bits (68), Expect = 3.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 438 EDERRLSDDNDNYNMIVAEQARVATPTATETMLPWKREEAEGS 310
EDER + N M+ E PTA E P K+EE EG+
Sbjct: 238 EDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGT 280
>BC040922-1|AAH40922.1| 587|Homo sapiens PDZRN4 protein protein.
Length = 587
Score = 31.5 bits (68), Expect = 3.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 438 EDERRLSDDNDNYNMIVAEQARVATPTATETMLPWKREEAEGS 310
EDER + N M+ E PTA E P K+EE EG+
Sbjct: 47 EDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGT 89
>AK131554-1|BAD18688.1| 776|Homo sapiens protein ( Homo sapiens
cDNA FLJ16796 fis, clone TBAES2008133, moderately
similar to Mus musculus semaF cytoplasmic domain
associated protein 3. ).
Length = 776
Score = 31.5 bits (68), Expect = 3.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 438 EDERRLSDDNDNYNMIVAEQARVATPTATETMLPWKREEAEGS 310
EDER + N M+ E PTA E P K+EE EG+
Sbjct: 236 EDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEEEEGT 278
>AB005297-1|BAA23647.1| 1584|Homo sapiens BAI 1 protein.
Length = 1584
Score = 31.5 bits (68), Expect = 3.4
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Frame = -2
Query: 579 FNPLKARIIKQYV----KTPEEILPTAVEKSLPWRRDRSTYN-FVPNEDILEEDERRLSD 415
FN L A + K ++ + P LP SL +RD++ + FV + DI ++ + LS
Sbjct: 1276 FNSLPANVSKLHLHGSPRYPGGPLPDFPNHSLTLKRDKAPKSSFVGDGDIFKKLDSELSR 1335
Query: 414 DNDNYNMIVAEQARVATPTATETMLPWKREEAEGS 310
+ + + V PTAT T+ P +EE + S
Sbjct: 1336 AQEK----ALDTSYVILPTATATLRPKPKEEPKYS 1366
>Z95400-2|CAI42741.1| 720|Homo sapiens kelch-like 4 (Drosophila)
protein.
Length = 720
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 716 KSDGTATTAVLHSLPNPRPATKKSVQRLRIKKIVVHF 606
KS+ +L +P P PA +++VQ L+ ++VHF
Sbjct: 64 KSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHF 100
>Z95400-1|CAI42740.1| 718|Homo sapiens kelch-like 4 (Drosophila)
protein.
Length = 718
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 716 KSDGTATTAVLHSLPNPRPATKKSVQRLRIKKIVVHF 606
KS+ +L +P P PA +++VQ L+ ++VHF
Sbjct: 64 KSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHF 100
>BC146677-1|AAI46678.1| 718|Homo sapiens kelch-like 4 (Drosophila)
protein.
Length = 718
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 716 KSDGTATTAVLHSLPNPRPATKKSVQRLRIKKIVVHF 606
KS+ +L +P P PA +++VQ L+ ++VHF
Sbjct: 64 KSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHF 100
>BC142652-1|AAI42653.1| 718|Homo sapiens kelch-like 4 (Drosophila)
protein.
Length = 718
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 716 KSDGTATTAVLHSLPNPRPATKKSVQRLRIKKIVVHF 606
KS+ +L +P P PA +++VQ L+ ++VHF
Sbjct: 64 KSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHF 100
>BC016966-1|AAH16966.1| 262|Homo sapiens ANGEL2 protein protein.
Length = 262
Score = 31.1 bits (67), Expect = 4.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 334 PWQHCLRCCWRRHSS 378
PW++ RCCW RH S
Sbjct: 16 PWENLQRCCWNRHIS 30
>AY946008-1|AAY23347.1| 1841|Homo sapiens peripheral clock protein 2
protein.
Length = 1841
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = -2
Query: 576 NPLKARIIKQYVKTPEEILPTAVE-KSLPWRRDRSTYNFVPNEDILEEDERRLSDDNDNY 400
N ++ R ++Q EE + ++ + P ++ T N + ++ L E+ER+ + ++
Sbjct: 33 NRIQMRSLQQQFSRMEETVRNLLQSQGSPEQKKEETVNIMVYQEKLSEEERKHKEALEDL 92
Query: 399 NMIVAEQARVATPTATE 349
+M+V E +R + + E
Sbjct: 93 HMVVDEDSRSESSSTDE 109
>AY946007-1|AAY23346.1| 522|Homo sapiens peripheral clock protein 1
protein.
Length = 522
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = -2
Query: 576 NPLKARIIKQYVKTPEEILPTAVE-KSLPWRRDRSTYNFVPNEDILEEDERRLSDDNDNY 400
N ++ R ++Q EE + ++ + P ++ T N + ++ L E+ER+ + ++
Sbjct: 33 NRIQMRSLQQQFSRMEETVRNLLQSQGSPEQKKEETVNIMVYQEKLSEEERKHKEALEDL 92
Query: 399 NMIVAEQARVATPTATE 349
+M+V E +R + + E
Sbjct: 93 HMVVDEDSRSESSSTDE 109
>AL592449-5|CAH71920.1| 544|Homo sapiens novel protein protein.
Length = 544
Score = 31.1 bits (67), Expect = 4.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 334 PWQHCLRCCWRRHSS 378
PW++ RCCW RH S
Sbjct: 38 PWENLQRCCWNRHIS 52
>AL035424-2|CAI42085.1| 720|Homo sapiens kelch-like 4 (Drosophila)
protein.
Length = 720
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 716 KSDGTATTAVLHSLPNPRPATKKSVQRLRIKKIVVHF 606
KS+ +L +P P PA +++VQ L+ ++VHF
Sbjct: 64 KSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHF 100
>AL035424-1|CAI42084.1| 718|Homo sapiens kelch-like 4 (Drosophila)
protein.
Length = 718
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 716 KSDGTATTAVLHSLPNPRPATKKSVQRLRIKKIVVHF 606
KS+ +L +P P PA +++VQ L+ ++VHF
Sbjct: 64 KSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHF 100
>AK092189-1|BAC03824.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ34870 fis, clone NT2NE2014651. ).
Length = 178
Score = 31.1 bits (67), Expect = 4.5
Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = -2
Query: 576 NPLKARIIKQYVKTPEEILPTAVE-KSLPWRRDRSTYNFVPNEDILEEDERRLSDDNDNY 400
N ++ R ++Q EE + ++ + P ++ T N + ++ L E+ER+ + ++
Sbjct: 76 NRIQMRSLQQQFSRMEETVRNLLQSQGSPEQKKEETVNIMVYQEKLSEEERKHKEALEDL 135
Query: 399 NMIVAEQARVATPTATE 349
+M+V E +R + + E
Sbjct: 136 HMVVDEDSRSESSSTDE 152
>AF284766-1|AAK49442.1| 720|Homo sapiens kelch-like protein KLHL4c
protein.
Length = 720
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 716 KSDGTATTAVLHSLPNPRPATKKSVQRLRIKKIVVHF 606
KS+ +L +P P PA +++VQ L+ ++VHF
Sbjct: 64 KSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHF 100
>AF284765-1|AAK49441.1| 718|Homo sapiens kelch-like protein KLHL4
protein.
Length = 718
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 716 KSDGTATTAVLHSLPNPRPATKKSVQRLRIKKIVVHF 606
KS+ +L +P P PA +++VQ L+ ++VHF
Sbjct: 64 KSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHF 100
>AB051474-1|BAB21778.1| 728|Homo sapiens KIAA1687 protein protein.
Length = 728
Score = 31.1 bits (67), Expect = 4.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 716 KSDGTATTAVLHSLPNPRPATKKSVQRLRIKKIVVHF 606
KS+ +L +P P PA +++VQ L+ ++VHF
Sbjct: 74 KSNSPVHHNILAPVPGPAPAHQRAVQNLQQHNLIVHF 110
>M77235-1|AAA58644.1| 2016|Homo sapiens sodium channel alpha subunit
protein.
Length = 2016
Score = 30.3 bits (65), Expect = 7.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 182 DCHFKELGILFFAIFCVSKFNIIINIFLKHVPKYFDRA 69
DC +GILFF + + F I++N+++ + + F A
Sbjct: 1741 DCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVA 1778
>EF629347-1|ABR15764.1| 1998|Homo sapiens Nav1.5 Na+ channel protein.
Length = 1998
Score = 30.3 bits (65), Expect = 7.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 182 DCHFKELGILFFAIFCVSKFNIIINIFLKHVPKYFDRA 69
DC +GILFF + + F I++N+++ + + F A
Sbjct: 1723 DCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVA 1760
>EF629346-1|ABR15763.1| 2016|Homo sapiens Nav1.5 Na+ channel protein.
Length = 2016
Score = 30.3 bits (65), Expect = 7.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 182 DCHFKELGILFFAIFCVSKFNIIINIFLKHVPKYFDRA 69
DC +GILFF + + F I++N+++ + + F A
Sbjct: 1741 DCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVA 1778
>EF179185-1|ABN05288.1| 2015|Homo sapiens sodium channel,
voltage-gated, type V, alpha (long QT syndrome 3)
protein.
Length = 2015
Score = 30.3 bits (65), Expect = 7.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 182 DCHFKELGILFFAIFCVSKFNIIINIFLKHVPKYFDRA 69
DC +GILFF + + F I++N+++ + + F A
Sbjct: 1740 DCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVA 1777
>DQ784809-1|ABQ01244.1| 2016|Homo sapiens sodium channel protein type
V alpha subunit protein.
Length = 2016
Score = 30.3 bits (65), Expect = 7.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 182 DCHFKELGILFFAIFCVSKFNIIINIFLKHVPKYFDRA 69
DC +GILFF + + F I++N+++ + + F A
Sbjct: 1741 DCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVA 1778
>AY148488-1|AAN61120.1| 2015|Homo sapiens cardiac sodium channel alpha
subunit Nav1.5 protein.
Length = 2015
Score = 30.3 bits (65), Expect = 7.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 182 DCHFKELGILFFAIFCVSKFNIIINIFLKHVPKYFDRA 69
DC +GILFF + + F I++N+++ + + F A
Sbjct: 1740 DCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVA 1777
>AY038064-1|AAK74065.1| 2015|Homo sapiens voltage-gated sodium channel
type V alpha subunit jejunal variant protein.
Length = 2015
Score = 30.3 bits (65), Expect = 7.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 182 DCHFKELGILFFAIFCVSKFNIIINIFLKHVPKYFDRA 69
DC +GILFF + + F I++N+++ + + F A
Sbjct: 1740 DCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVA 1777
>AF482988-1|AAO91669.1| 2015|Homo sapiens cardiac sodium channel alpha
subunit protein.
Length = 2015
Score = 30.3 bits (65), Expect = 7.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 182 DCHFKELGILFFAIFCVSKFNIIINIFLKHVPKYFDRA 69
DC +GILFF + + F I++N+++ + + F A
Sbjct: 1740 DCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVA 1777
>AB208866-1|BAD92103.1| 1576|Homo sapiens voltage-gated sodium channel
type V alpha isoform b variant protein.
Length = 1576
Score = 30.3 bits (65), Expect = 7.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 182 DCHFKELGILFFAIFCVSKFNIIINIFLKHVPKYFDRA 69
DC +GILFF + + F I++N+++ + + F A
Sbjct: 1301 DCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVA 1338
>AB158470-1|BAD12085.1| 1962|Homo sapiens TTX-resistant sodium channel
splicing variant protein.
Length = 1962
Score = 30.3 bits (65), Expect = 7.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 182 DCHFKELGILFFAIFCVSKFNIIINIFLKHVPKYFDRA 69
DC +GILFF + + F I++N+++ + + F A
Sbjct: 1687 DCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVA 1724
>AB158469-1|BAD12084.1| 2016|Homo sapiens TTX-resistant sodium channel
protein.
Length = 2016
Score = 30.3 bits (65), Expect = 7.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -3
Query: 182 DCHFKELGILFFAIFCVSKFNIIINIFLKHVPKYFDRA 69
DC +GILFF + + F I++N+++ + + F A
Sbjct: 1741 DCGSPAVGILFFTTYIIISFLIVVNMYIAIILENFSVA 1778
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,003,774
Number of Sequences: 237096
Number of extensions: 1812047
Number of successful extensions: 4201
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4200
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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