Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l11
(766 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014134-3339|AAF53961.2| 1291|Drosophila melanogaster CG9256-PB... 124 1e-28
AE014134-3338|AAF53960.2| 1291|Drosophila melanogaster CG9256-PA... 124 1e-28
AY128467-1|AAM75060.1| 999|Drosophila melanogaster RE21674p pro... 91 1e-18
AF235935-1|AAF60313.1| 1203|Drosophila melanogaster sodium/hydro... 91 1e-18
BT025213-1|ABF17904.1| 320|Drosophila melanogaster FI01030p pro... 32 0.75
AY094918-1|AAM11271.1| 320|Drosophila melanogaster RH31013p pro... 32 0.75
AF071227-1|AAC25575.1| 320|Drosophila melanogaster CDK7/cyclin ... 32 0.75
AE013599-1166|AAF58758.1| 320|Drosophila melanogaster CG7614-PA... 32 0.75
AE014297-1754|AAF54984.1| 1481|Drosophila melanogaster CG14365-P... 29 9.2
>AE014134-3339|AAF53961.2| 1291|Drosophila melanogaster CG9256-PB,
isoform B protein.
Length = 1291
Score = 124 bits (299), Expect = 1e-28
Identities = 78/168 (46%), Positives = 100/168 (59%), Gaps = 13/168 (7%)
Frame = -2
Query: 687 ITFTAKSPPGYKEVSPTSSHKEXXXXXXXXXXXLPGFNPLKARIIKQY------------ 544
+TFTAKS P S + LPGF+ KARI+ Q+
Sbjct: 863 LTFTAKSSP--------DSDRANNNSLIAHIQNLPGFDASKARIVVQHYAPKADDNPDTD 914
Query: 543 VKTPEEIL-PTAVEKSLPWRRDRSTYNFVPNEDILEEDERRLSDDNDNYNMIVAEQARVA 367
+++PE+ + PTA E LPWRRDRS + V I EED R LS ++D + RVA
Sbjct: 915 IESPEQAIGPTAAELILPWRRDRSYQSIVAEHPIPEED-RNLSRESDG-------ERRVA 966
Query: 366 TPTATETMLPWKREEAEGSGALKQSEFPSWASNKEYLAYNSPSSTFLG 223
TPTATE+ LPWKR+ E + A++Q+EFP+WASNKEYLAYNSPS+TFLG
Sbjct: 967 TPTATESQLPWKRQGDECTDAVQQNEFPAWASNKEYLAYNSPSATFLG 1014
>AE014134-3338|AAF53960.2| 1291|Drosophila melanogaster CG9256-PA,
isoform A protein.
Length = 1291
Score = 124 bits (299), Expect = 1e-28
Identities = 78/168 (46%), Positives = 100/168 (59%), Gaps = 13/168 (7%)
Frame = -2
Query: 687 ITFTAKSPPGYKEVSPTSSHKEXXXXXXXXXXXLPGFNPLKARIIKQY------------ 544
+TFTAKS P S + LPGF+ KARI+ Q+
Sbjct: 863 LTFTAKSSP--------DSDRANNNSLIAHIQNLPGFDASKARIVVQHYAPKADDNPDTD 914
Query: 543 VKTPEEIL-PTAVEKSLPWRRDRSTYNFVPNEDILEEDERRLSDDNDNYNMIVAEQARVA 367
+++PE+ + PTA E LPWRRDRS + V I EED R LS ++D + RVA
Sbjct: 915 IESPEQAIGPTAAELILPWRRDRSYQSIVAEHPIPEED-RNLSRESDG-------ERRVA 966
Query: 366 TPTATETMLPWKREEAEGSGALKQSEFPSWASNKEYLAYNSPSSTFLG 223
TPTATE+ LPWKR+ E + A++Q+EFP+WASNKEYLAYNSPS+TFLG
Sbjct: 967 TPTATESQLPWKRQGDECTDAVQQNEFPAWASNKEYLAYNSPSATFLG 1014
>AY128467-1|AAM75060.1| 999|Drosophila melanogaster RE21674p protein.
Length = 999
Score = 91.5 bits (217), Expect = 1e-18
Identities = 44/77 (57%), Positives = 58/77 (75%)
Frame = -2
Query: 453 EDILEEDERRLSDDNDNYNMIVAEQARVATPTATETMLPWKREEAEGSGALKQSEFPSWA 274
E + E++R LS ++D + RVATPTATE+ LPWKR+ E + A++Q+EFP+WA
Sbjct: 883 EHPIPEEDRNLSRESDG-------ERRVATPTATESQLPWKRQGDECTDAVQQNEFPAWA 935
Query: 273 SNKEYLAYNSPSSTFLG 223
SNKEYLAYNSPS+TFLG
Sbjct: 936 SNKEYLAYNSPSATFLG 952
>AF235935-1|AAF60313.1| 1203|Drosophila melanogaster sodium/hydrogen
exchanger protein protein.
Length = 1203
Score = 91.5 bits (217), Expect = 1e-18
Identities = 44/77 (57%), Positives = 58/77 (75%)
Frame = -2
Query: 453 EDILEEDERRLSDDNDNYNMIVAEQARVATPTATETMLPWKREEAEGSGALKQSEFPSWA 274
E + E++R LS ++D + RVATPTATE+ LPWKR+ E + A++Q+EFP+WA
Sbjct: 857 EHPIPEEDRNLSRESDG-------ERRVATPTATESQLPWKRQGDECTDAVQQNEFPAWA 909
Query: 273 SNKEYLAYNSPSSTFLG 223
SNKEYLAYNSPS+TFLG
Sbjct: 910 SNKEYLAYNSPSATFLG 926
>BT025213-1|ABF17904.1| 320|Drosophila melanogaster FI01030p
protein.
Length = 320
Score = 32.3 bits (70), Expect = 0.75
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -2
Query: 570 LKARIIKQYVKTPEEILPTAVEKSLPWRRDRSTYNFVPNEDILEEDERRLSDDNDNYNMI 391
++ RI++ Y K E+ A + YN N DI+E ++R + DN +I
Sbjct: 74 IRRRILRDYNKREEDFASLAEYNDYLEEIEDIVYNLCNNIDIIETNKRIEAYKRDNREVI 133
Query: 390 VAEQARVATPT-ATETMLPWKREEAE 316
+ RV A E ML ++ + E
Sbjct: 134 QRNKTRVGRDEYALEEMLELEKVQEE 159
>AY094918-1|AAM11271.1| 320|Drosophila melanogaster RH31013p
protein.
Length = 320
Score = 32.3 bits (70), Expect = 0.75
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -2
Query: 570 LKARIIKQYVKTPEEILPTAVEKSLPWRRDRSTYNFVPNEDILEEDERRLSDDNDNYNMI 391
++ RI++ Y K E+ A + YN N DI+E ++R + DN +I
Sbjct: 74 IRRRILRDYNKREEDFASLAEYNDYLEEIEDIVYNLCNNIDIIETNKRIEAYKRDNREVI 133
Query: 390 VAEQARVATPT-ATETMLPWKREEAE 316
+ RV A E ML ++ + E
Sbjct: 134 QRNKTRVGRDEYALEEMLELEKVQEE 159
>AF071227-1|AAC25575.1| 320|Drosophila melanogaster CDK7/cyclin H
assembly factor MAT1 protein.
Length = 320
Score = 32.3 bits (70), Expect = 0.75
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -2
Query: 570 LKARIIKQYVKTPEEILPTAVEKSLPWRRDRSTYNFVPNEDILEEDERRLSDDNDNYNMI 391
++ RI++ Y K E+ A + YN N DI+E ++R + DN +I
Sbjct: 74 IRRRILRDYNKREEDFASLAEYNDYLEEIEDIVYNLCNNIDIIETNKRIEAYKRDNREVI 133
Query: 390 VAEQARVATPT-ATETMLPWKREEAE 316
+ RV A E ML ++ + E
Sbjct: 134 QRNKTRVGRDEYALEEMLELEKVQEE 159
>AE013599-1166|AAF58758.1| 320|Drosophila melanogaster CG7614-PA
protein.
Length = 320
Score = 32.3 bits (70), Expect = 0.75
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Frame = -2
Query: 570 LKARIIKQYVKTPEEILPTAVEKSLPWRRDRSTYNFVPNEDILEEDERRLSDDNDNYNMI 391
++ RI++ Y K E+ A + YN N DI+E ++R + DN +I
Sbjct: 74 IRRRILRDYNKREEDFASLAEYNDYLEEIEDIVYNLCNNIDIIETNKRIEAYKRDNREVI 133
Query: 390 VAEQARVATPT-ATETMLPWKREEAE 316
+ RV A E ML ++ + E
Sbjct: 134 QRNKTRVGRDEYALEEMLELEKVQEE 159
>AE014297-1754|AAF54984.1| 1481|Drosophila melanogaster CG14365-PA
protein.
Length = 1481
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -2
Query: 552 KQYVKTPEEILPTAVEKSLPWRRDRSTYNFVPNEDI-LEEDERRLSDDNDN 403
+Q E++ PTA K +P D + ++ + E+E+ L D++D+
Sbjct: 559 QQQENEEEDLTPTAESKPIPGEEDMGAPKVIKDQKLESNEEEQELEDEDDS 609
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,596,129
Number of Sequences: 53049
Number of extensions: 546290
Number of successful extensions: 1905
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1897
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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