Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l11
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical p...    30   2.1  
U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical p...    30   2.1  
U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p...    28   6.3  
Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AL117204-36|CAB55150.2|  138|Caenorhabditis elegans Hypothetical...    28   8.4  

>U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical
           protein C23H3.9a protein.
          Length = 503

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = -2

Query: 534 PEEILPTAVEKSLPWR-RDRS---TYNFVPNEDILEEDERRLSDDNDNYNMIVAEQARVA 367
           P + +PTA  +  PW  +DR+   TYN +  E  L+    + S   +      A+     
Sbjct: 160 PSQPIPTATSRKAPWYIKDRTAWPTYNRISAEKALQ----KTSTTQETTTSTTAQPTTTT 215

Query: 366 TPTATETMLP 337
           T T T T  P
Sbjct: 216 TATTTTTTTP 225


>U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical
           protein C23H3.9b protein.
          Length = 489

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = -2

Query: 534 PEEILPTAVEKSLPWR-RDRS---TYNFVPNEDILEEDERRLSDDNDNYNMIVAEQARVA 367
           P + +PTA  +  PW  +DR+   TYN +  E  L+    + S   +      A+     
Sbjct: 156 PSQPIPTATSRKAPWYIKDRTAWPTYNRISAEKALQ----KTSTTQETTTSTTAQPTTTT 211

Query: 366 TPTATETMLP 337
           T T T T  P
Sbjct: 212 TATTTTTTTP 221


>U80453-9|AAT81206.1|  432|Caenorhabditis elegans Hypothetical
           protein C23H3.9d protein.
          Length = 432

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
 Frame = -2

Query: 534 PEEILPTAVEKSLPWR-RDRS---TYNFVPNEDILEEDERRLSDDNDNYNMIVAEQARVA 367
           P + +PTA  +  PW  +DR+   TYN +  E  L+    + S   +      A+     
Sbjct: 99  PSQPIPTATSRKAPWYIKDRTAWPTYNRISAEKALQ----KTSTTQETTTSTTAQPTTTT 154

Query: 366 TPTATETMLP 337
           T T T T  P
Sbjct: 155 TATTTTTTTP 164


>U88167-2|AAB42225.3|  908|Caenorhabditis elegans Hypothetical
           protein D2092.5 protein.
          Length = 908

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -2

Query: 369 ATPTATETMLPWKREEAEGSGALKQSEFPSWASNKEYLAYNSPSSTFLGKSV 214
           A  TAT   +P K+  A   G  + +EF + AS  E+  +++P+S     ++
Sbjct: 830 ANVTATTGPVPQKQPRAGFHGISRYNEFTNIASGGEHRLFDTPASAISASAI 881


>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
           protein C52B9.8 protein.
          Length = 1336

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 297 QSEFPSWASNKEYLAYNSPSST 232
           Q+EF  WA+N   +AY  P  T
Sbjct: 431 QNEFDKWAANVHLIAYKGPKET 452


>Z75540-1|CAA99847.2| 1227|Caenorhabditis elegans Hypothetical protein
            F37D6.1 protein.
          Length = 1227

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 546  YVKTPEEILPTAVEKSLPWRRDRSTYNFVPNEDILEEDERRLSDD 412
            YV    E+     EKS  W R++       NE + E D R++S++
Sbjct: 1055 YVTKSAEVGRWLDEKSFEWTREKLLACSKKNESLKERDSRKVSEN 1099


>AL117204-36|CAB55150.2|  138|Caenorhabditis elegans Hypothetical
           protein Y116A8C.30a protein.
          Length = 138

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 384 EQARVATPTATETMLPWKREEAEGSGALKQSEFPSW 277
           +QA++A  + TE   P  + E +G+G  K  +FP +
Sbjct: 90  QQAQLAQDSNTEKRAPQVQSEGKGAGDHKPQKFPKY 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,142,264
Number of Sequences: 27780
Number of extensions: 296827
Number of successful extensions: 1165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)