Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l11
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   3.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.1  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   4.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.5  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 179 CHFKELGILFFAIFCVSKFNIIIN 108
           C F  L ++   +F VSKF++ +N
Sbjct: 59  CLFHRLALMNDNVFDVSKFDVYLN 82


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 465 FVPNEDILEEDERRLSDDNDNYNMIV 388
           FV N+DIL E     ++D+D  NMI+
Sbjct: 406 FVVNKDILHEHNVDDNEDHDE-NMII 430


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 70  ALSKYFGTCFKNIFIIILNLETQNIAKNKI 159
           ++  Y GTCF  +F  +L   T      +I
Sbjct: 282 SIDVYLGTCFVMVFASLLEYATVGYMAKRI 311


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 70  ALSKYFGTCFKNIFIIILNLETQNIAKNKI 159
           ++  Y GTCF  +F  +L   T      +I
Sbjct: 282 SIDVYLGTCFVMVFASLLEYATVGYMAKRI 311


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 70  ALSKYFGTCFKNIFIIILNLETQNIAKNKI 159
           ++  Y GTCF  +F  +L   T      +I
Sbjct: 221 SIDVYLGTCFVMVFASLLEYATVGYMAKRI 250


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 367 RHSSLLSHDHVVVIVVIGQSS 429
           +H+S L H ++V +++I Q +
Sbjct: 109 KHASFLKHSNIVKVLMIEQGA 129


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 329 RFHGNIVSVAVGVATRACS 385
           RF  N + +AVG+   ACS
Sbjct: 402 RFLNNYLFLAVGIVGGACS 420


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 187 LMTAILKNLEFYFSLYFVFP 128
           LM A+     + +SLY +FP
Sbjct: 348 LMAALATEASYDYSLYEIFP 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,387
Number of Sequences: 438
Number of extensions: 3721
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)