Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l10
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   5.3  
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc...    25   5.3  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    25   5.3  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   5.3  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    24   7.0  

>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 136 YYFSNT*IFLRETFKMRLAGAIFTNVTKMLDFYSQFNP 23
           YYF+NT   + E FK R     + +V   L F ++  P
Sbjct: 256 YYFNNTSSTISEEFKKRNKECQYDSVLNRLTFPTEQYP 293


>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
           Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 309 YYLCSNSDGIRSLKLIT 359
           Y++C  SDGIR L  +T
Sbjct: 62  YFVCEKSDGIRCLLYMT 78


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +3

Query: 60  TFVKIAPANLILKVSRKNI*VLEK*YNNFNVIIHNHNRL*HIFHLS--EFLLFIPPQTTL 233
           +F  ++P N+   +  + + + E  + N+    HN  +L  +FHLS  E    I PQT +
Sbjct: 537 SFWPLSPNNVNFHLPEELVPLYEG-FQNYYYSCHNGRKLSWLFHLSKGEIKARINPQTNV 595


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 172 DCNTFFTCQNFCYLFRRKLRYNRVK 246
           D N+FF C+   +L   K+ Y++++
Sbjct: 44  DLNSFFDCEEELFLSANKIFYSKLR 68


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 264 YHCELMNECNFHGNLYYLCSNSD 332
           YH   + + ++H +L   CS SD
Sbjct: 651 YHSRALRDVSYHPSLPLFCSGSD 673


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,846
Number of Sequences: 5004
Number of extensions: 25261
Number of successful extensions: 51
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)