Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l10
         (381 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M98552-5|AAA28207.1|  401|Caenorhabditis elegans Hypothetical pr...    36   0.013
AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical ...    28   2.0  
AL132862-10|CAB60540.1|  122|Caenorhabditis elegans Hypothetical...    27   6.0  
Z35663-16|CAA84726.2|  462|Caenorhabditis elegans Hypothetical p...    26   7.9  
Z35598-6|CAA84654.1|  580|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z35598-4|CAA84653.1|  488|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical pr...    26   7.9  

>M98552-5|AAA28207.1|  401|Caenorhabditis elegans Hypothetical
          protein ZK370.5 protein.
          Length = 401

 Score = 35.5 bits (78), Expect = 0.013
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 97 FKMRLAGAIFTNVTKMLDFYSQFNPSPLSIKQ 2
          F  +L G    ++ K LD+YSQF PS L+I+Q
Sbjct: 3  FSRKLLGPFVGSLAKKLDYYSQFQPSSLTIQQ 34


>AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical
           protein Y81B9A.1 protein.
          Length = 579

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 20  RRVELRVEIKHFRHIRENRSC*PHFESFT*KYLSVR 127
           R  ELR E+ +  ++R N +   HFES   +YL ++
Sbjct: 534 RETELRKELANPMNVRYNNNTRAHFESHLDRYLDLK 569


>AL132862-10|CAB60540.1|  122|Caenorhabditis elegans Hypothetical
           protein Y73F8A.15 protein.
          Length = 122

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 103 ETFKMRLAGAIFTNVTKMLDFYSQFNPSPLSIK 5
           +TF   + G IFT    +  + ++ NP PL +K
Sbjct: 42  DTFNFNVRGRIFTKALFVESYLTKPNPEPLILK 74


>Z35663-16|CAA84726.2|  462|Caenorhabditis elegans Hypothetical
           protein T04A8.3 protein.
          Length = 462

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 293 IAFIHQFTVVYRWEVYLTRL*R 228
           IAF+H+  + +RW  Y TR+ R
Sbjct: 119 IAFMHREALPFRWNDYFTRVSR 140


>Z35598-6|CAA84654.1|  580|Caenorhabditis elegans Hypothetical
           protein F10F2.8 protein.
          Length = 580

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 293 IAFIHQFTVVYRWEVYLTRL*R 228
           IAF+H+  + +RW  Y TR+ R
Sbjct: 137 IAFMHREALPFRWNDYFTRVSR 158


>Z35598-5|CAA84652.1|  628|Caenorhabditis elegans Hypothetical
           protein F10F2.7 protein.
          Length = 628

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 293 IAFIHQFTVVYRWEVYLTRL*R 228
           IAF+H+  + +RW  Y TR+ R
Sbjct: 173 IAFMHREALPFRWNDYFTRVSR 194


>Z35598-4|CAA84653.1|  488|Caenorhabditis elegans Hypothetical
           protein F10F2.6 protein.
          Length = 488

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 293 IAFIHQFTVVYRWEVYLTRL*R 228
           IAF+H+  + +RW  Y TR+ R
Sbjct: 136 IAFMHREALPFRWNDYFTRVSR 157


>Z35598-3|CAA84655.3|  525|Caenorhabditis elegans Hypothetical
           protein F10F2.5 protein.
          Length = 525

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 293 IAFIHQFTVVYRWEVYLTRL*R 228
           IAF+H+  + +RW  Y TR+ R
Sbjct: 131 IAFMHREALPFRWNDYFTRVSR 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,881,117
Number of Sequences: 27780
Number of extensions: 143851
Number of successful extensions: 369
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)