Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l10
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   2.8  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   2.8  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   3.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   4.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   6.5  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 246 IDFPTIYHCELMNECNFHGNLYYLCSNSDGIRSLKLITRF 365
           +D PT+YH EL  +       + L  N D     + +  F
Sbjct: 45  VDQPTVYHPELYQK----ARTFNLVENLDNYNDKEAVNEF 80


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 246 IDFPTIYHCELMNECNFHGNLYYLCSNSDGIRSLKLITRF 365
           +D PT+YH EL  +       + L  N D     + +  F
Sbjct: 45  VDQPTVYHPELYQK----ARTFNLVENLDNYNDKEAVNEF 80


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 189 EKCVTVYCDCVLLH*N 142
           +K V +YC+C+L + N
Sbjct: 56  DKKVQLYCECILKNFN 71


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 135 YNNFNVIIHNHNRL*HIFHLSEFLLFIP 218
           YNN+N   +N+N    +++   ++  IP
Sbjct: 101 YNNYNYNNNNYNNYKKLYYNINYIEQIP 128


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +3

Query: 180 HIFHLSEFLLFIPPQTTL 233
           H F +S  L F+ P T +
Sbjct: 220 HAFEISTMLFFVLPMTII 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,091
Number of Sequences: 438
Number of extensions: 1952
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)