Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l09
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 29 0.46
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 28 1.1
SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces pomb... 28 1.4
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|... 27 2.5
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 26 4.3
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 26 5.7
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 25 7.5
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 25 7.5
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.5
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 25 9.9
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 9.9
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 29.5 bits (63), Expect = 0.46
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 605 LNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLENTD 435
+ +N NY+ K +GE S N + N+P I DL ++ LEN D
Sbjct: 135 IENNPNYSNKPSKLKRALSGENSVFSIHQRNTLSPSSNLPRIPSDLYDIKQFLENLD 191
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = -3
Query: 278 DIDNIKLSHMQLARLLCYTAVVESRNSKPWKAIFNNDTC 162
+ D +KL QL RL Y AVVE + + K I+ +TC
Sbjct: 280 EFDMVKLRQYQLERLRYYYAVVECDSVRTAKVIY--ETC 316
>SPBC29A10.13 |atp7||F0-ATPase subunit D|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 175
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = -3
Query: 563 KDQANGELQKLSAMLLNYKK-SNKNVPNIKFDLKNLSFMLENTDK---IDIIQFDDVKNY 396
K N +L+ ++A + + KNV +K +L+NLS L+N ++ + I +D+K
Sbjct: 84 KIDLNSQLKAINAFEAKASEGAKKNVELVKAELQNLSATLKNIEQARPTEEITIEDMKQA 143
Query: 395 VQPAIVNLFES 363
V P I + E+
Sbjct: 144 V-PEIEKIVET 153
>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 885
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 152 DSFFNYIMNILNMIKTNQGSLAHNLSVVYHIENIQMNLQNKL 27
D+F YI+N + +Q S Y+++NI NL N++
Sbjct: 494 DAFSFYILNASDGSVISQKSRDFKADEFYYVDNISKNLPNQI 535
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -3
Query: 542 LQKLSAMLLNYKKS--NKNVPNIKFDLKNLSFMLENTDKIDIIQFDDVKNYVQ 390
L+K S ++LN + N+P+IKFD + + + ++ + + + D +K + Q
Sbjct: 723 LRKSSNLILNLFSLMVDANIPDIKFDKEKVVYKVKERFCLQMSESDAIKYFEQ 775
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.8 bits (54), Expect = 5.7
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = +2
Query: 458 TNFLGRI*YLARFCWTFCNLTTSPTVFVTRR*LDLC*TVYWW 583
+NF R+ L FCW L T VFV L L +Y W
Sbjct: 955 SNFYKRLIALLLFCWICSTLVTVLLVFVP---LSLGRAIYAW 993
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -3
Query: 506 KSNKNVPNIKFDLKNLSFM-LENTDKIDIIQF 414
K+N N+ N+ FDL+N L+N D+ ++ F
Sbjct: 76 KANFNLTNMVFDLENYDLTDLDNFDRSKLLVF 107
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 476 FDLKNLSFMLENTDKIDIIQFDDVK 402
F+L N+ F LEN D D+ FD K
Sbjct: 79 FNLTNMVFDLENYDLTDLDNFDRSK 103
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 25.4 bits (53), Expect = 7.5
Identities = 6/15 (40%), Positives = 14/15 (93%)
Frame = +3
Query: 471 VEFNIWHVFVGLFVI 515
+ +++W++F+GLF+I
Sbjct: 715 LSYDLWYIFLGLFII 729
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.5
Identities = 27/138 (19%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Frame = -3
Query: 470 LKNLSFMLENTDKIDIIQFDDVKNYVQPAIVNLFESHNRSL-NNY----SXXXXXXXXXX 306
+ + +++EN + ++Q + ++ V+L + N SL ++Y S
Sbjct: 3905 MPTIVYLMENCEIDSLLQNAKIPQNIKKLTVSLGSAENESLADSYLKLASTEPLWLFINN 3964
Query: 305 XXXLVPNITDIDNIKLSHMQL-ARLLCYTAVVESRNSKPWKAIFNNDTCVLTD--SFFNY 135
P + + +H+ +R++C + E N P + + + + V SF N
Sbjct: 3965 IHLSTPWAEKLPSKMSNHLHKNSRIVCLS---EIHNQLPHQLLCISRSIVFNKQTSFKNN 4021
Query: 134 IMNILNMIKTNQGSLAHN 81
++N+L ++ T +L HN
Sbjct: 4022 LLNLLELLPTMTHTLPHN 4039
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = -3
Query: 575 KLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKNLSF 453
K KD+ N + K+ +NY KN+ +LK F
Sbjct: 182 KCILKDKTNAHVNKIPQDEVNYSLPQKNITIFSKELKENEF 222
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Frame = -1
Query: 325 TRYWKTAMK---IWCQTSPTLITLNCRTCNWRACYVTRPSLSHATVNLGKQY 179
+++WK IW + I C C W + R +L A ++ K+Y
Sbjct: 137 SKHWKELADDDVIWHRMCEQHINRKCEKCGWGLPLLERNTLYAAKASIQKRY 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,369
Number of Sequences: 5004
Number of extensions: 50238
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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