Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l09
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942           30   1.5  
04_04_1553 - 34363848-34366058,34369087-34370451                       30   1.9  
01_06_0928 + 33085403-33089224                                         29   2.6  
04_03_0190 + 12448027-12450825                                         28   5.9  
02_05_0551 + 29907768-29907909,29907995-29909280                       28   5.9  
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    28   5.9  
01_07_0195 + 41907183-41907306,41907427-41907974                       28   5.9  
02_01_0422 - 3084940-3087072                                           28   7.8  

>01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942
          Length = 1020

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = -3

Query: 548 GELQKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLE 444
           G+L+KL  + L+Y   N ++P   F+L++LS+ L+
Sbjct: 428 GDLKKLFVLDLSYNHLNGSIPKEIFELQSLSWFLD 462


>04_04_1553 - 34363848-34366058,34369087-34370451
          Length = 1191

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/55 (34%), Positives = 31/55 (56%)
 Frame = -3

Query: 623 INELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKNL 459
           I EL +L+   N  +  L   D+A G L KL+ + L+Y   N N+P++   L++L
Sbjct: 686 IPELRWLSLQENQLSGSL---DKALGNLSKLTLIDLSYNMFNGNIPDVFGKLRSL 737


>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -3

Query: 131 MNILNMIKTNQGSLAHNLSVVYHIENIQMNLQNKLK 24
           +  LN+IKT    L  +L  +YH++ +Q+N  NK+K
Sbjct: 583 LRYLNIIKTFISELPRSLCTLYHLQLLQLN--NKVK 616


>04_03_0190 + 12448027-12450825
          Length = 932

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 215 VESRNSKPWKAIFNNDTCVL-TDSFFNYIMNILNM 114
           +  +N+  WK ++NN  C    D   N++ ++LN+
Sbjct: 391 LREKNNSEWKRVYNNLLCSFDNDPGLNHLKHVLNL 425


>02_05_0551 + 29907768-29907909,29907995-29909280
          Length = 475

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 272 QCR*CLAPDFHC-RFPVACSVRSSSYSTIDCA 364
           QC+ C +P  +  R P+    RSSSYS + CA
Sbjct: 169 QCKPCPSPPCYSQRDPLFDPTRSSSYSAVPCA 200


>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 25/88 (28%), Positives = 40/88 (45%)
 Frame = -3

Query: 605 LNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLENTDKID 426
           LN  +++  N+L  K  A     K+  +LL  K+  K    +  D + L      TDK D
Sbjct: 627 LNRKMDFVENEL--KRAAELNESKIQKILLEKKQLQKEKEVLVEDRQKLE-----TDKAD 679

Query: 425 IIQFDDVKNYVQPAIVNLFESHNRSLNN 342
           I +  D  N +  ++    E++NR  NN
Sbjct: 680 IRRDIDSLNTLSKSLKERREAYNRDRNN 707


>01_07_0195 + 41907183-41907306,41907427-41907974
          Length = 223

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 578 NKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLENTDKI 429
           NKLF++    GE+      L++++K+N N P   F +  L+  L  T  I
Sbjct: 137 NKLFTRTVCKGEVFVFPRGLVHFQKNNGNTP--AFAIAALNSQLPGTQSI 184


>02_01_0422 - 3084940-3087072
          Length = 710

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = -3

Query: 548 GELQKLSAMLLNYKKSNKNVPNIKFDLKNLSFMLENTDKIDIIQFDDVKNYVQPAIVNL 372
           GEL+ L ++ L++   N+ +P    +LKNL  +L+       + ++ +   + PA+VNL
Sbjct: 566 GELKALVSLNLSFNNLNREIPQSISNLKNL-MVLD-------LSYNHLTGAIPPALVNL 616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,534,917
Number of Sequences: 37544
Number of extensions: 282983
Number of successful extensions: 629
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)