Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc13l09
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical...    31   0.56 
AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical ...    29   2.3  
AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z83219-2|CAB05695.1|  377|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U29535-18|AAV28362.1|  140|Caenorhabditis elegans Hypothetical p...    28   5.3  
U29535-17|AAK31454.1|  295|Caenorhabditis elegans Hypothetical p...    28   5.3  
AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical p...    28   6.9  
AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain, ...    28   6.9  
AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical ...    28   6.9  
AC084159-9|AAK39358.1|  569|Caenorhabditis elegans Hypothetical ...    28   6.9  
U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AC024882-15|AAF60936.1|  688|Caenorhabditis elegans Hypothetical
           protein Y9C9A.13 protein.
          Length = 688

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 21/80 (26%), Positives = 39/80 (48%)
 Frame = -3

Query: 656 MRKYALLQKMIINELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIK 477
           ++K+  L+K+++ E L  ND V+      F+   +N +        LNY  S KN+ ++ 
Sbjct: 267 LQKHEKLKKIVVAETLLENDEVDGVEIMNFATFDSNKKT-------LNYMTSKKNLDSVI 319

Query: 476 FDLKNLSFMLENTDKIDIIQ 417
           F L+N   +     +I  I+
Sbjct: 320 FLLRNFETLFYKIQEISKIE 339


>AL022289-2|CAA18374.1|  478|Caenorhabditis elegans Hypothetical
           protein ZK1225.2 protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = -3

Query: 662 VNMRKYALLQKMIIN---ELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKN 492
           +N   Y  + +++       L L  N +  T  ++  D+    L   + + L  K+  + 
Sbjct: 204 INSAHYRCMMELVTRPGWSYLVLLQNFDLITKSVYEMDRIFELLDGANDVNLASKRPGRR 263

Query: 491 VPNIKFDLKNLSFMLENT 438
            PN+K+DLK L      T
Sbjct: 264 KPNLKWDLKTLKLFRNKT 281


>AL021473-1|CAA16305.1|  570|Caenorhabditis elegans Hypothetical
           protein Y20C6A.2 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/74 (22%), Positives = 32/74 (43%)
 Frame = -3

Query: 650 KYALLQKMIINELLFLNDNVNYATNKLFSKDQANGELQKLSAMLLNYKKSNKNVPNIKFD 471
           K   L  +++ E      ++++    LF K    G +Q L  + L  +    ++ NI   
Sbjct: 184 KKCTLNDLLVMEAKDFVSSIDFEELNLFLKFWIKGFIQHLKCVELYVESDTSDLQNIAIL 243

Query: 470 LKNLSFMLENTDKI 429
            KN+S+     DK+
Sbjct: 244 FKNISYEEAPNDKV 257


>Z83219-2|CAB05695.1|  377|Caenorhabditis elegans Hypothetical
           protein C31C9.3 protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 168 HMRFDRFFFQLYHEYFEYD*NQSRIPGSQSVGGIP 64
           +  F+R+F++ YH   + D + SR P + S+  +P
Sbjct: 44  YREFERWFYRFYHGNEDLDYDMSREPKTASLSELP 78


>U29535-18|AAV28362.1|  140|Caenorhabditis elegans Hypothetical
           protein C25H3.10b protein.
          Length = 140

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -3

Query: 467 KNLSFMLENTDKIDIIQFDDVKNYVQPAIVNL 372
           + +SF L N+++I+ I  DD+  Y++ A V+L
Sbjct: 58  EKISFTLANSNEINTINHDDMDKYLRGAKVDL 89


>U29535-17|AAK31454.1|  295|Caenorhabditis elegans Hypothetical
           protein C25H3.10a protein.
          Length = 295

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -3

Query: 467 KNLSFMLENTDKIDIIQFDDVKNYVQPAIVNL 372
           + +SF L N+++I+ I  DD+  Y++ A V+L
Sbjct: 58  EKISFTLANSNEINTINHDDMDKYLRGAKVDL 89


>AF078787-6|AAC26953.1|  290|Caenorhabditis elegans Hypothetical
           protein T17A3.7 protein.
          Length = 290

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = -3

Query: 638 LQKMIINELLFLNDNVNYATNKL--FSKDQANGELQKLSAMLLNYKKSNKNVPNIKFDLK 465
           L+ ++++ +  +  + ++  N+L  F K   NG   +L  + +N   ++     I   LK
Sbjct: 173 LEDLLVSNISEMRIDKSFPLNQLCLFLKHWINGSNDRLEYLEMNLPANSTKTQFISIALK 232

Query: 464 NLSFMLENTDK 432
            + + L  TDK
Sbjct: 233 GIDYQLAPTDK 243


>Z75955-13|CAB00113.2|  424|Caenorhabditis elegans Hypothetical
           protein R07B7.4 protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = -3

Query: 539 QKLSAMLLNYKKSNKNVP------NIKFDLKNLSFMLENTDKIDIIQFD 411
           Q+LS +L+N  +   NV         KFDLK+ S +++N+D +  +  D
Sbjct: 67  QELSQILINEAEKYNNVKFHFNCKATKFDLKSESLIVQNSDNLSTVDGD 115


>AF067217-2|AAF99977.1| 1887|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 7 protein.
          Length = 1887

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 602 NDNVNYATNKLFSKD 558
           NDN+ Y TNK+F +D
Sbjct: 930 NDNIQYGTNKIFMRD 944


>AF040653-3|ABS83855.1|  390|Caenorhabditis elegans Hypothetical
           protein K05F6.4 protein.
          Length = 390

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 470 LKNLSFMLENTDKIDIIQFDDVKNYVQPAI 381
           LKN  F +EN+D+I+I    DVK+++   I
Sbjct: 144 LKNGEFCVENSDRIEIKLLVDVKSWLNNLI 173


>AC084159-9|AAK39358.1|  569|Caenorhabditis elegans Hypothetical
           protein Y73B3A.4 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
 Frame = -3

Query: 575 KLFSKDQANGELQKLSAMLLNYKKSNKNVP-NIKFDLKNLSFMLEN 441
           K  SKD+A+ +++KLS M ++  K +   P  + FD K+ S+ + N
Sbjct: 212 KHLSKDRAHLKMKKLSKMPVDSAKLDLTYPLGVTFDTKSDSWYITN 257


>U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical
           protein B0403.5 protein.
          Length = 413

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 346 ITTRPN*TRYWKTAMKIWCQTSPTLIT 266
           +TTRP  T  W+T  +I   T PT  T
Sbjct: 365 LTTRPVTTTTWRTTRRITTTTKPTTTT 391


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,448,228
Number of Sequences: 27780
Number of extensions: 290602
Number of successful extensions: 852
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)