Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l06
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz... 34 0.021
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 31 0.20
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c... 29 0.46
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 29 0.61
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 29 0.61
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 29 0.61
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 28 1.1
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 28 1.4
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 28 1.4
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 27 1.8
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 1.8
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 27 2.4
SPAC664.08c |||traub transciption factor family protein |Schizos... 27 2.4
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.2
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 26 4.3
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 25 7.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 7.5
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 25 7.5
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 25 9.9
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 25 9.9
>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 334
Score = 33.9 bits (74), Expect = 0.021
Identities = 17/44 (38%), Positives = 28/44 (63%)
Frame = -3
Query: 648 CRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILVYL 517
CR++ L + I + HRL +V+++ L GI+SL+DIL Y+
Sbjct: 270 CRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYI 313
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 30.7 bits (66), Expect = 0.20
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 198 LREYLYSFLHHHNHYKYHFRGFFQRFRLQSFLHQHI-RHYMKLHRY 332
L+E Y LH+HN H + FFQ++ + FL I H + RY
Sbjct: 344 LKEIAYIMLHYHNKPLEH-KAFFQKYSSKRFLKASIFVHQLVRQRY 388
>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 473
Score = 29.5 bits (63), Expect = 0.46
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -3
Query: 498 EKKISSLQEIFRPLEENKVPESSKENESDTI 406
EKKI SL+E+ P E ++ E+ ENE D +
Sbjct: 250 EKKIGSLKELAVPQESIELLEAEYENEMDRV 280
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 29.1 bits (62), Expect = 0.61
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Frame = -3
Query: 609 IVRTESHRLLLVNKDDMLIGIVSLSDILVYLNRIIPSEKKISSLQEIFRPLEENKVPESS 430
I+R+ + ++ + KD L I L+ +P ++ S L + L + V +
Sbjct: 160 ILRSAADLIIELLKDSSLDEQGRKKQIEEVLSTELPQDR-FSQLVNLGNRLTDYTVEQEE 218
Query: 429 KENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVECVDAETTADGNVE-KSLE 253
+ NE VPVL N+A E + E D+ E E V ET+ E K++E
Sbjct: 219 ELNEEGVNESGVPVLFNEADEEEEAVEAMEEDEVAE----DEDVVLETSISQEEEKKNIE 274
Query: 252 N 250
N
Sbjct: 275 N 275
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 29.1 bits (62), Expect = 0.61
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Frame = -3
Query: 630 LYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILVYLNRIIPSEKKISSLQEIFRPLEE 451
L + LE ++ T LL+NKD++ + + LS + L++++PS + P E
Sbjct: 137 LKKGLECVIETPPR--LLMNKDEISLNLQRLSHMETILSKLMPS-------MSLDLPSLE 187
Query: 450 NKVPESSKENES--DTISIEVPVLGNQAVPEVNEEKTAEND 334
K+ E S+ ++ D + ++ LG+ +NE +T D
Sbjct: 188 AKIAELSESLQTYPDKVLTDIE-LGSYQQVTLNETQTYYED 227
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 29.1 bits (62), Expect = 0.61
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = -3
Query: 543 SLSDILVYLNRIIPSEKKISSLQEIFRPLEENKVPESSKENESDTIS 403
+L D +V + SEK L E FRP+ + +V E KENE ++
Sbjct: 563 TLQDNIVSGRGLSLSEKSYRILPEKFRPVCDKRVIEIPKENEEVVVA 609
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +1
Query: 115 AVPPITISLEYIFSTLDMNIL 177
AVPP TI+L +IF LD++ L
Sbjct: 152 AVPPYTITLSHIFGKLDVDSL 172
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 27.9 bits (59), Expect = 1.4
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = -3
Query: 456 EENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTA-----ENDDTGEVSCNVECVDA 292
++ K+ N+ S E LGN+++ +NE +++ +N D V +
Sbjct: 321 KQAKLETKKSGNKDHATSSEKLSLGNESIHSINETRSSSIEEPDNADNKIVEEEPMLLPV 380
Query: 291 ETTADG-NVEKSLENDICNDCDDAE 220
TTA G NV ++++ D + +D E
Sbjct: 381 PTTAQGQNVLEAVQYDGLDSLEDME 405
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 27.9 bits (59), Expect = 1.4
Identities = 23/106 (21%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Frame = -3
Query: 663 EKLQKCRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILVYLNRIIPSEKKIS 484
E++ +CR S+ +EVI + S + L D ++ LS V + +++ ++
Sbjct: 197 EQIIECRDSLAQEYLVEVICQAFSDNMHLQTLDTYFGTVIKLSP-SVNVTQLV-----VA 250
Query: 483 SLQEIFRPLEENKVPESSKENESDTISIEV-PVLGNQAVPEVNEEK 349
L + ++ +SS E+ES+T++ ++ + N+ V + +E++
Sbjct: 251 MLNRLTDYVQREYESDSSNEDESETVTEKLGDIKINEEVQQKDEQE 296
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = -3
Query: 504 PSEKKISSLQEIFRPLEENKVPESSKE--NESDTISIEVPVLGN 379
PSE + + LQ + P+ N VP+ ++ ES+ + + P N
Sbjct: 185 PSENRKNRLQNVLSPIASNNVPDFNQNYPTESNPMFLSTPRFQN 228
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 540 LSDILVYLN-RIIPSEKKISSLQEIFRPLEENKVPESSKENESDTI 406
+ ++ VY + R+ K+SSL+E + LE+ +P+ + N+S I
Sbjct: 686 MEEVKVYNDSRVEALLAKVSSLEETLKILEQKSLPKFTPHNQSPRI 731
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 27.1 bits (57), Expect = 2.4
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Frame = -3
Query: 504 PSEKKISSLQEIFRPLEENKVPESSKENESD-----TISIEVPV-----LGNQAVPEVNE 355
P + + S+ Q E + P S +EN D T +IE+PV L NQ + +
Sbjct: 34 PRQSEESAGQSTGTESEVIQTPTSVEENNEDENSMSTTTIEIPVVKRRNLRNQKKKKKTD 93
Query: 354 EKTAENDDT 328
E+ +N+DT
Sbjct: 94 EEAEDNEDT 102
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/103 (18%), Positives = 46/103 (44%)
Frame = -3
Query: 555 IGIVSLSDILVYLNRIIPSEKKISSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQ 376
+G VSL D L + P E+ +L++ F E++ E+ + + L ++
Sbjct: 1 MGKVSLKDELAGMLNPQPQERDPEALEDAFSDREDSSEEENDTLGREHYVDVSESKLRSK 60
Query: 375 AVPEVNEEKTAENDDTGEVSCNVECVDAETTADGNVEKSLEND 247
P+++ + E+ N +++++++ E S E++
Sbjct: 61 QAPQLDPKFKGRKTSRQEL-LNSGSLNSQSSSPSEEEDSEEDE 102
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +3
Query: 126 YHNFFGIHFFYFRHEHFNYY*NIGLREYLYSFLHHHNHYKYHFRGFFQRFRLQSFL---- 293
+H+ F I F++ F ++ + R ++ F+H ++ F FF F L SF
Sbjct: 65 HHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLF 124
Query: 294 -HQHIRHYMKLHRYHH 338
H + +L R+ H
Sbjct: 125 TSLHFNFFFRLCRHKH 140
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 26.2 bits (55), Expect = 4.3
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Frame = -3
Query: 495 KKISSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVS 316
+KISSL+ + LE S+ E T+ E L + + + N+EK+ N+ EVS
Sbjct: 883 EKISSLE---KDLEAATKTASTLSKELKTVKSENDSLKSVSNDDQNKEKSVNNEKFKEVS 939
Query: 315 -CNVECVDAETTADGNVEKSLENDICNDCDDAEMNIDT 205
E + D +E+ L+ DI +A +N+ +
Sbjct: 940 QALAEANEKLNARDEEIER-LKVDIIG-LQNASLNMQS 975
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 504 PSEKKISSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAE-NDDT 328
P IS+ QEI +P + + E + S+E + + ++ NE +T E N D+
Sbjct: 385 PDSTNISNEQEIVQPQPTHTTNVALVEEINRPDSVESAITASSSIDTGNENETQEVNSDS 444
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 534 DILVYLNRIIPSEKKISSLQEIFRPL 457
DI YL +IPS +K + I +PL
Sbjct: 237 DIFSYLKNLIPSAEKSPAYNYILKPL 262
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/52 (23%), Positives = 30/52 (57%)
Frame = -3
Query: 642 SSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILVYLNRIIPSEKKI 487
+S+ + ALE ++ + L +V++ D +IG++SL + + + E+++
Sbjct: 337 ASLRVSTALERMIEGKFSNLPVVDESDAIIGMLSLFHLATAIEQTPEEEEEV 388
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +2
Query: 461 GRNI-SCSEEIFFSEGIILFK*TNMSDRDTIPINISSLFTNNSRWLSVLTITS 616
GR I +C ++ + + + T+ + ++P S + NNS W + +T++S
Sbjct: 351 GRIIHNCCLQVAYYDAMADSVSTSSASSLSVPRGFSGMLNNNSEWNNSMTMSS 403
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 648 CRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILV 523
C+ + + ++ + + + +L+L+N+D L G LSD V
Sbjct: 57 CKKDLLDWPRVKHVYQQNNEKLVLLNRDASLDGTRGLSDATV 98
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 279 LQSFLHQHIRHYMKLHRYHHSP 344
L+ F HQH H KL R SP
Sbjct: 20 LKRFYHQHYEHTGKLSRTFFSP 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,265
Number of Sequences: 5004
Number of extensions: 47925
Number of successful extensions: 188
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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