Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc13l06
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0443 + 3204142-3204674,3205446-3206178 39 0.004
02_05_1232 + 35110891-35111154,35111272-35111448,35111557-351116... 36 0.039
03_05_0432 - 24231984-24233048,24233391-24235160,24235261-242365... 34 0.12
03_01_0380 + 2955102-2955357,2955468-2956189 33 0.21
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348... 31 0.63
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115... 31 1.1
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 30 1.5
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704... 29 2.5
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060 29 2.5
07_01_1179 + 11184521-11184536,11184593-11184691,11184790-111848... 29 3.3
02_05_0415 + 28787353-28787496,28787658-28788204,28788297-287883... 29 3.3
01_05_0510 - 22816607-22816916,22817005-22817177,22817341-228176... 29 4.4
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 5.9
06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818 28 5.9
01_06_1577 - 38379951-38380167,38380349-38380543,38380919-383811... 28 5.9
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891... 28 7.7
05_03_0013 + 7362056-7362471,7363235-7364081,7364272-7364758,736... 28 7.7
03_06_0317 + 33097257-33097336,33098500-33098926,33100007-331000... 28 7.7
01_06_0785 - 31985455-31988463 28 7.7
>02_01_0443 + 3204142-3204674,3205446-3206178
Length = 421
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = -3
Query: 648 CRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDIL 526
C TL EA+E V HRL +V+++ +L G+VSL+D+L
Sbjct: 362 CSPESTLGEAIEKAVAHHVHRLWVVDEEGLLAGVVSLTDVL 402
>02_05_1232 +
35110891-35111154,35111272-35111448,35111557-35111626,
35111717-35111788,35111921-35111976
Length = 212
Score = 35.5 bits (78), Expect = 0.039
Identities = 16/46 (34%), Positives = 31/46 (67%)
Frame = -3
Query: 642 SSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDILVYLNRII 505
S T+ +A ++++ + HRL +VN+D +IGIV+ +D+L L ++
Sbjct: 165 SDKTVMDAAALMLKKKIHRLPIVNQDRQVIGIVTRADVLRELEALL 210
>03_05_0432 -
24231984-24233048,24233391-24235160,24235261-24236582,
24236668-24237013
Length = 1500
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/91 (24%), Positives = 42/91 (46%)
Frame = -3
Query: 498 EKKISSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEV 319
EK++ Q+ R L K E SK +++T + + + + ++ +E T+ ND
Sbjct: 278 EKQLILAQDKMRLLALEKQIEVSKAKDTETEKVML----EKELEKIQKESTSLNDQIHSS 333
Query: 318 SCNVECVDAETTADGNVEKSLENDICNDCDD 226
S + + E N ++ LE D+C D+
Sbjct: 334 SSMIIRLQDEIITMKNAQRRLEEDVCRHVDE 364
>03_01_0380 + 2955102-2955357,2955468-2956189
Length = 325
Score = 33.1 bits (72), Expect = 0.21
Identities = 21/98 (21%), Positives = 43/98 (43%)
Frame = -3
Query: 495 KKISSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVS 316
KK+ S + L++ ++ S + + + +S E+P A+ E++ + + +S
Sbjct: 206 KKMPSSSPVDSNLKKVRIALDSDDEDENILSYELP-----AISEISSVEIGNVSNVNSLS 260
Query: 315 CNVECVDAETTADGNVEKSLENDICNDCDDAEMNIDTP 202
+ + A + K +E IC D D +MN P
Sbjct: 261 AAADYLSAPLNVLTSAAKEVEEPICIDAIDVDMNPVNP 298
>11_01_0450 -
3487464-3487844,3487883-3488268,3488883-3489033,
3489132-3491102,3492090-3492149,3492240-3492436,
3492678-3492963
Length = 1143
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 393 PVLGNQAVPEVNEEKTAENDDTGEVSCNVECVDAETTADGNVEKS 259
P+L N + ++++E T N DTG + +DA T++ N +S
Sbjct: 453 PILENPFMQDISDENTNSNKDTGHEGLTLLNLDATLTSNENFAQS 497
>05_01_0167 -
1153778-1153927,1154006-1154797,1155602-1156408,
1156514-1156618,1156985-1157059,1157160-1157233,
1157388-1157450,1157549-1157647,1157704-1157811,
1157908-1157973,1158073-1158150,1158257-1158304,
1158381-1158440,1158527-1158610,1158902-1158949,
1159049-1159096,1161462-1161579
Length = 940
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = -3
Query: 474 EIFRPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSC-NVECV 298
+I + + N S E + D +G A+ E +E+ EN+D G +SC N++ +
Sbjct: 213 KIMKQIAGNSKDFSETEAKLDKTKNSEADIGCSALNE-SEKSIIENNDKGTISCMNMQEI 271
Query: 297 DAETTADGNVEKSLENDICNDCD 229
++E A+ N + EN++ + D
Sbjct: 272 NSENGAN-NAKVDYENNVLSLLD 293
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/45 (31%), Positives = 18/45 (40%)
Frame = +3
Query: 213 YSFLHHHNHYKYHFRGFFQRFRLQSFLHQHIRHYMKLHRYHHSPQ 347
Y HH Y++ R FQ R Q QH H H+ + Q
Sbjct: 154 YQQHHHQQQYEHQNRIHFQHHRQQQQYQQHQHHNQNHHQQQYQQQ 198
>03_02_0275 +
7042433-7042732,7042864-7043140,7043751-7044231,
7044943-7045491,7045556-7045680,7045824-7045966
Length = 624
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 201 REYLYSFLHHHNHYKYHFRGFFQRFRLQ 284
R LY ++H+HN YK H Q +L+
Sbjct: 389 RRNLYRYMHYHNRYKAHTDSLKQEAKLK 416
>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
Length = 794
Score = 29.5 bits (63), Expect = 2.5
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = -3
Query: 432 SKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVEC-VDAETTADGNV--EK 262
S+ENE + + VL ++ PEV E + NDD S V+ + + + +GNV EK
Sbjct: 262 SEENEEGEMEEDGMVLNSE--PEVVELRMDTNDDVNNASVGVDMETELQRSPNGNVPGEK 319
Query: 261 SLEND 247
+ ++D
Sbjct: 320 AEDDD 324
>07_01_1179 +
11184521-11184536,11184593-11184691,11184790-11184852,
11185011-11185084,11185187-11185261,11185371-11185514,
11185629-11185733,11185839-11186276,11187102-11188241,
11188320-11188493
Length = 775
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = -3
Query: 465 RPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSC-NVECVDAE 289
+ L N S E + D +G A+ E +E+ EN+D G +SC N++ +++E
Sbjct: 2 KQLAGNSKNFSETEAKLDKTKNSEADIGCSALNE-SEKSIIENNDKGTISCMNMQEINSE 60
Query: 288 TTADGNVEKSLENDICNDCD 229
A+ N + EN++ + D
Sbjct: 61 NGAN-NAKVDYENNVLSLLD 79
>02_05_0415 +
28787353-28787496,28787658-28788204,28788297-28788392,
28788532-28788645,28788929-28789962,28790053-28790124
Length = 668
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -3
Query: 423 NESDTISIEVPVLGNQAVP-EVNEEKTAENDDTGEVS--CNVECVDAETTADGNVEKSLE 253
N+ + + EVP + +P +V ++KT+E DD EV VE A+ T D E+
Sbjct: 349 NDKEVDADEVP---EEKLPADVTDDKTSEEDDLNEVEKLSAVEIPQADLTGDKTSEEEDL 405
Query: 252 NDI 244
N++
Sbjct: 406 NEV 408
>01_05_0510 -
22816607-22816916,22817005-22817177,22817341-22817607,
22817951-22818393,22818474-22818635,22820991-22821414,
22823177-22823227
Length = 609
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = -3
Query: 648 CRSSITLYEALEVIVRTESHRLLLVNKDDMLIGIVSLSDIL 526
C +L ++ I +HR+ +V+ D ++G+V+L D++
Sbjct: 536 CSPDASLGSVIDSIASRITHRIYVVDGDFEVVGVVTLRDVI 576
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = -3
Query: 444 VPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVECVDAETTADGNVE 265
+P+ K SD++ + N V + + E++D G + +D + DGN E
Sbjct: 1531 IPKQLKN--SDSLVLRTNQESNSTV-DCDASSGEEDEDDGTSDGELVSIDRDEEEDGNSE 1587
Query: 264 KSLENDIC 241
++L +C
Sbjct: 1588 RALATKVC 1595
>06_03_0530 + 21807464-21807685,21807809-21808207,21808312-21808818
Length = 375
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 225 HHHNHYKYHFRGFFQRFRLQ 284
HHH+H +H +G FQ F LQ
Sbjct: 5 HHHHHQDHH-QGHFQAFSLQ 23
>01_06_1577 -
38379951-38380167,38380349-38380543,38380919-38381191,
38381281-38381455,38381925-38382035,38382120-38382390,
38382990-38383139,38383242-38384246
Length = 798
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 516 NRIIPSEKKISSLQEIFRPLE--ENKVPESSKENESDT 409
N +PSE++ S + +P+E E K P KE DT
Sbjct: 94 NNTVPSEEEKFSENTVEKPVESSEEKAPPKEKEESKDT 131
>08_02_0269 +
15087481-15087893,15087978-15088074,15089068-15089112,
15089281-15089492,15090809-15090911,15091002-15091097,
15091405-15091473,15093341-15093588,15093640-15093759,
15093847-15094284,15094503-15094620,15095262-15095303,
15097099-15097161,15097365-15097475,15097730-15097801,
15097875-15097993,15099682-15099745,15100238-15101860
Length = 1350
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 366 EVNEEKTAENDDTGEVSCNVECVDAETTADGNVEKSLENDICNDCDD 226
E +++ + N D+ + + N + D +T DGN + IC CDD
Sbjct: 205 ESSDDCSYSNSDSSDDN-NDDSTDEDTDTDGNATDDDTDMICAICDD 250
>05_03_0013 +
7362056-7362471,7363235-7364081,7364272-7364758,
7365062-7365126,7365275-7365643
Length = 727
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/98 (20%), Positives = 45/98 (45%)
Frame = -3
Query: 495 KKISSLQEIFRPLEENKVPESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVS 316
KKI S ++ L++ ++ S + + + +S E+P AV ++ E +T
Sbjct: 204 KKILSNSPVYSSLKKVRIAIDSDDEDDNILSYELP-----AVDKMVEVETGNTSVANSPP 258
Query: 315 CNVECVDAETTADGNVEKSLENDICNDCDDAEMNIDTP 202
V+ + + ++ +E D+ D D +M++ +P
Sbjct: 259 IVVDNLFVPSDVLTSMANEVEKDVHVDSVDVDMSLASP 296
>03_06_0317 +
33097257-33097336,33098500-33098926,33100007-33100078,
33100490-33100600,33100973-33101173,33102157-33102222
Length = 318
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 438 ESSKENESDTISIEVPVLGNQAVPEVNEEKTAENDDTGEVSCNVE-CVDAETTAD 277
E S + ESD + I P N E +N GEV+C + +D+ET D
Sbjct: 35 EMSTDEESDGVVICPPDGNNDDREEAISSNNHDNCQEGEVTCVKDPVIDSETQED 89
>01_06_0785 - 31985455-31988463
Length = 1002
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 434 DSGTLFSSRGRNISCSEEIFFS 499
D+GTLFS+ RN+S S F S
Sbjct: 9 DAGTLFSAPSRNLSSSSSAFVS 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,643,939
Number of Sequences: 37544
Number of extensions: 247522
Number of successful extensions: 795
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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